trigger-workflow-2 #8
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| repository_dispatch: | |
| types: [trigger-workflow-2] | |
| workflow_dispatch: | |
| name: pkgdown | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| container: rformassspectrometry/metabonaut:latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install rcmdcheck | |
| run: | | |
| install.packages('rcmdcheck') | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: | | |
| Rscript -e "rcmdcheck::rcmdcheck(args = c('--no-manual'), error_on = 'error', check_dir = 'check')" | |
| shell: bash {0} | |
| - name: Install deploy dependencies | |
| run: | | |
| apt-get update | |
| apt-get -y install rsync | |
| - name: Install pkgdown | |
| if: github.ref == 'refs/heads/main' | |
| run: | | |
| install.packages('pkgdown') | |
| shell: Rscript {0} | |
| - name: Install package | |
| if: github.ref == 'refs/heads/main' | |
| run: R CMD INSTALL . | |
| - name: Build site | |
| run: | | |
| Rscript -e "pkgdown::init_site()" | |
| Rscript -e "pkgdown::build_article('01-end-to-end-untargeted-metabolomics', quiet = FALSE)" | |
| ls vignettes/*.Rmd | xargs -n1 basename | grep -v '01-end-to-end-untargeted-metabolomics.qmd' | cut -f 1 -d '.' | parallel -j4 "Rscript -e 'pkgdown::build_article(\"{}\")'" | |
| Rscript -e "pkgdown::build_site(lazy = TRUE, quiet = FLASE, new_process = FALSE, install = FALSE)" | |
| shell: bash {0} | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/[email protected] | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: docs |