ci: change R tempdir #25
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [jomain, main] | |
| pull_request: | |
| branches: [main] | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| name: pure pkgdown.yaml | |
| permissions: read-all | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:devel | |
| # Only restrict concurrency for non-PR jobs | |
| concurrency: | |
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| permissions: | |
| contents: write | |
| steps: | |
| ## Set the R library to the directory matching the | |
| ## R packages cache step further below when running on Docker (Linux). | |
| - name: Set R Library home on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| mkdir /__w/_temp/Library | |
| mkdir /__w/_temp/Rtmp | |
| echo ".libPaths('/__w/_temp/Library')" > ~/.Rprofile | |
| - name: Checkout package | |
| uses: actions/checkout@v4 | |
| - name: Repository metadata | |
| uses: varunsridharan/action-repository-meta@main | |
| with: | |
| REPOSITORY: ${{github.repository}} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - continue-on-error: true | |
| run: | | |
| git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| - name: Setup pandoc from r-lib | |
| if: runner.os != 'Linux' | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Setup R from r-lib | |
| if: runner.os != 'Linux' | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgdown, local::. | |
| needs: website | |
| - name: Setup tinytex from r-lib | |
| if: runner.os != 'Linux' | |
| uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Build articles | |
| run: pkgdown::build_articles(quiet = FALSE) | |
| shell: Rscript {0} | |
| - name: Build site | |
| run: | | |
| install.packages("unixtools", repos = "http://www.rforge.net/") | |
| unixtools::set.tempdir("/__w/_temp/Rtmp") | |
| pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE,preview = FALSE) | |
| shell: Rscript {0} | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/[email protected] | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: docs |