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Update Dockerfile
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philouail committed Oct 10, 2024
1 parent 862c7ba commit 4eb5dd2
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -25,11 +25,11 @@ RUN Rscript -e "BiocManager::install(c('RCurl', 'xcms', 'MsExperiment', 'Summari
## Install the current package with vignettes
RUN Rscript -e "devtools::install('.', dependencies = TRUE, type = 'source', build_vignettes = FALSE)"

USER rstudio
## USER rstudio

## build article for end-to-end:test
RUN Rscript -e "quarto::quarto_render('vignettes/a-end-to-end-untargeted-metabolomics.qmd', quiet = FALSE)"
##RUN Rscript -e "quarto::quarto_render('vignettes/a-end-to-end-untargeted-metabolomics.qmd', quiet = FALSE)"

USER root
##USER root

RUN find vignettes/ -name "*.html" -type f -delete && find vignettes/ -name "*_files" -type d -exec rm -r {} +
##RUN find vignettes/ -name "*.html" -type f -delete && find vignettes/ -name "*_files" -type d -exec rm -r {} +

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