ci: adapt to pkgdown webpage

rformassspectrometry · Oct 11, 2024 · ac51b93 · ac51b93
1 parent 88eee81
commit ac51b93
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Showing 3 changed files with 8 additions and 3 deletions.
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -38,6 +38,8 @@ jobs:
           extra-packages: any::pkgdown, local::.
           needs: website
 
+      - uses: r-lib/actions/setup-tinytex@v2
+
       - name: Build articles
         run: pkgdown:::build_quarto_articles(quiet = FALSE)
         shell: Rscript {0}

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -43,6 +43,5 @@ URL: https://github.com/rformassspectrometry/metabonaut/, https://rformassspectr
 BugReports: https://github.com/rformassspectrometry/metabonaut/issues/new
 BiocType: Workflow
 RoxygenNote: 7.3.2
-VignetteBuilder: quarto, knitr
-SystemRequirements: Quarto command line tool
-    (<https://github.com/quarto-dev/quarto-cli>).
+VignetteBuilder: quarto
+SystemRequirements: pandoc
diff --git a/vignettes/dataset-investigation.qmd b/vignettes/dataset-investigation.qmd
@@ -6,6 +6,10 @@ vignette: >
   %\VignetteIndexEntry{Dataset investigation: What to do when you get your data}
   %\VignetteEngine{quarto::html}
   %\VignetteEncoding{UTF-8}
+knitr:
+  opts_chunk:
+    collapse: true
+    comment: '#>'
 ---
 
 ## In Construction