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Update copyright date and bump version
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rrwick committed May 1, 2020
1 parent 911a790 commit f0e1748
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Showing 20 changed files with 21 additions and 27 deletions.
2 changes: 1 addition & 1 deletion test/test_consensus.py
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This module contains some tests for Trycycler. To run them, execute `python3 -m pytest` from the
root Trycycler directory.
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/__main__.py
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#!/usr/bin/env python3
"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/align.py
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"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/alignment.py
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This module contains a class for describing read-to-reference alignments (as made by minimap2) and
related functions.
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/circularisation.py
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"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/cluster.py
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"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/consensus.py
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"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/help_formatter.py
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"""
This module contains some subclasses for customising Trycycler's help text formatting.
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/initial_check.py
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"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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5 changes: 1 addition & 4 deletions trycycler/intrange.py
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"""
This module contains a class for describing read-to-reference alignments (as made by minimap2) and
related functions.
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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4 changes: 1 addition & 3 deletions trycycler/log.py
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"""
This module contains a class for writing output to both stdout and a log file.
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/mash.py
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"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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3 changes: 1 addition & 2 deletions trycycler/misc.py
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#!/usr/bin/env python3
"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/msa.py
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"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/pairwise.py
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"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/partition.py
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"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/settings.py
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probably too low-level to expose to the user (via command-line arguments) but developers may want
to tweak them.
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/software.py
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#!/usr/bin/env python3
"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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2 changes: 1 addition & 1 deletion trycycler/starting_seq.py
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"""
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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4 changes: 2 additions & 2 deletions trycycler/version.py
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The version is stored here in a separate file so it can exist in only one place.
https://stackoverflow.com/a/7071358/2438989
Copyright 2019 Ryan Wick ([email protected])
Copyright 2020 Ryan Wick ([email protected])
https://github.com/rrwick/Trycycler
This file is part of Trycycler. Trycycler is free software: you can redistribute it and/or modify
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If not, see <http://www.gnu.org/licenses/>.
"""

__version__ = '0.1.0'
__version__ = '0.2.0'

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