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rrwick

Bump version

Mar 28, 2024

964daee · Mar 28, 2024

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Name		Name	Last commit message	Last commit date
parent directory ..
data		data	Add known starting gene search	Jan 14, 2020
__init__.py		__init__.py	Initial commit	Jan 8, 2020
__main__.py		__main__.py	Fix argument types	Aug 1, 2023
alignment.py		alignment.py	Use simple scoring scheme for consensus choices	May 23, 2020
circularisation.py		circularisation.py	Attempt all circularisations before quitting with an error	Oct 20, 2023
cluster.py		cluster.py	Fix Rscript path	Sep 28, 2021
consensus.py		consensus.py	Fix bugs related to lowercase bases	Jan 10, 2021
dotplot.py		dotplot.py	Fix Pillow deprecation warning	Apr 5, 2023
help_formatter.py		help_formatter.py	Update copyright date and bump version	May 1, 2020
initial_check.py		initial_check.py	Various enchancements to circularisation	May 13, 2020
intrange.py		intrange.py	Update copyright date and bump version	May 1, 2020
log.py		log.py	Attempt all circularisations before quitting with an error	Oct 20, 2023
mash.py		mash.py	Lots of enchancements to cluster command	May 5, 2020
misc.py		misc.py	Use scheduler's CPU count when possible	Mar 13, 2023
msa.py		msa.py	Fixes for Muscle v5	Oct 11, 2022
pairwise.py		pairwise.py	Print pairwise results in order	Aug 8, 2023
partition.py		partition.py	Use simple scoring scheme for consensus choices	May 23, 2020
reconcile.py		reconcile.py	Parallelization of get_pairwise_alignments	Aug 2, 2023
settings.py		settings.py	Quit with error if more than 26 assemblies (available letters) is given	Jul 7, 2020
software.py		software.py	Fix parsing of R package versions	Apr 5, 2023
starting_seq.py		starting_seq.py	Fix bug with starting seq coverage	Oct 21, 2022
subsample.py		subsample.py	Error when genome size assembly fails	Aug 10, 2023
version.py		version.py	Bump version	Mar 28, 2024
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