install bedtools #375
install bedtools #375
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| set -x | ||
| set -e | ||
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| sudo apt-get install -y bedtools |
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could you add a final newline?
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The name of this directory should actually be the name of an R package which depends on bedtools' use to be functional as this command will only be executed when that package is in your application's dependency list. A quick cran search makes it appear that maybe bedr makes use of bedtools? How are you looking to use bedtools?
| if (length(is_bedtools_installed) == 0) { | ||
| print("bedtools is not installed.") | ||
| } else { | ||
| print("bedtools is installed.") |
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as related to the overall comment of the directory name being incorrect -- tests tend to install the related R package (and run a function which tests that the dependent system package is installed).
Consider rpoppler.
Additionally, you'll want this script to exit non-zero if the dependency is not resolved -- calling stop() instead of print() is one one such way.
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