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Sherbrooke Connectivity Imaging Lab

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI.
README.md

Sherbrooke Connectivity Imaging Laboratory

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications.

Useful links:

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  1. scilpy scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    Python 66 65

  2. tractoflow tractoflow Public

    TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

    Nextflow 55 23

  3. scil-documentation scil-documentation Public

    Documentation for the SCIL

    Python 4 16

Repositories

Showing 10 of 59 repositories
  • nf-pediatric Public

    nf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

    scilus/nf-pediatric’s past year of commit activity
    Nextflow 3 MIT 1 3 1 Updated Apr 12, 2025
  • noddi_flow Public
    scilus/noddi_flow’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Apr 11, 2025
  • nf-mouse_flow Public
    scilus/nf-mouse_flow’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Apr 11, 2025
  • tractometry_flow Public
    scilus/tractometry_flow’s past year of commit activity
    Nextflow 0 12 0 0 Updated Apr 11, 2025
  • nf-neuro Public

    nf-neuro is a nextflow neuroimaging library maintained by the SCIL team

    scilus/nf-neuro’s past year of commit activity
    Nextflow 9 GPL-3.0 16 14 6 Updated Apr 11, 2025
  • scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    scilus/scilpy’s past year of commit activity
    Python 66 65 37 16 Updated Apr 11, 2025
  • neurogister Public
    scilus/neurogister’s past year of commit activity
    Python 1 1 0 0 Updated Apr 8, 2025
  • quactography Public
    scilus/quactography’s past year of commit activity
    Python 1 Apache-2.0 7 0 1 Updated Apr 8, 2025
  • combine_flows Public
    scilus/combine_flows’s past year of commit activity
    Shell 0 6 1 2 Updated Apr 4, 2025
  • containers-scilus Public

    Files needed to build a container to run all scilus flows.

    scilus/containers-scilus’s past year of commit activity
    Dockerfile 2 5 2 2 Updated Apr 1, 2025
View all repositories

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