Add initial version of files based on clm5.0.000 and cesm2_0_alpha09a…

…, doesn't build as clm src directories aren't complete

.config_files.xml

@@ -0,0 +1,31 @@
+<?xml version="1.0"?>
+
+<?xml-stylesheet type="text/xsl" ?>
+
+<entry_id>
+
+  <!-- This is the same as the default entry in
+       cime/config/cesm/config_files.xml except for the value for clm:
+       In a standalone clm checkout, COMP_ROOT_DIR_LND is $SRCROOT
+       rather than $SRCROOT/components/clm.
+
+       However, because of the way overrides are handled, we need to
+       re-specify the full information here rather than just overriding
+       the value for clm.
+  -->
+  <entry id="COMP_ROOT_DIR_LND">
+    <type>char</type>
+    <default_value>unset</default_value>
+    <values>
+      <value component="clm"       >$SRCROOT</value>
+      <value component="dlnd"      >$CIMEROOT/src/components/data_comps/dlnd</value>
+      <value component="slnd"      >$CIMEROOT/src/components/stub_comps/slnd</value>
+      <value component="xlnd"      >$CIMEROOT/src/components/xcpl_comps/xlnd</value>
+    </values>
+    <group>case_comps</group>
+    <file>env_case.xml</file>
+    <desc>Root directory of the case land model component  </desc>
+    <schema>$CIMEROOT/config/xml_schemas/config_compsets.xsd</schema>
+  </entry>
+
+</entry_id>

.gitignore

@@ -0,0 +1,31 @@
+# directories checked out by manage_externals, and other files created
+# by manage_externals
+manage_externals.log
+cime/
+components/
+
+# ignore svn directories
+**/.svn/**
+.svn/
+
+# binary files
+*.nc
+
+# editor files
+*.swp
+*~
+
+# mac files
+.DS_Store
+
+# cmake generated files
+build/
+CMakeFiles/
+
+# build output
+*.o
+*.mod
+core.*
+*.gz
+*.log !run.log
+*.pyc

Copyright

@@ -0,0 +1,74 @@
+CESM1.5: Copyright Notice and Disclaimer
+
+The Community Earth System Model (CESM was developed in cooperation with 
+the National Science Foundation, the Department of Energy, 
+the National Aeronautics and Space Administration, and 
+the University Corporation for Atmospheric Research National Center for Atmospheric Research.
+
+Except for the segregable components listed below, CESM is public domain software. 
+There may be other third party tools and libraries that are embedded, and 
+they may have their own copyright notices and terms.
+
+The following components are copyrighted and may only be used, modified, 
+or redistributed under the terms indicated below.
+
+Code		 Institution		Copyright	Terms of Use/Disclaimer
+----		 -----------	 	---------	-----------------------
+ESMF		 University of 		Copyright 	University of Illinois/NCSA Open Source License
+		 Illinois/NCSA 		2002-2009, 
+					University of 
+					Illinois/NCSA 
+					Open Source 
+					License
+
+POP,SCRIP,CICE	Los Alamos National	Copyright 2008	Los Alamos National Security, LLC 
+		Laboratory   		Los Alamos 
+					National 
+					Security, LLC
+
+Glimmer-CISM 	LANL/U.			Copyright	GNU General Public License
+		Bristol/U.		2004-2010, 
+		Edinburgh/U.		GNU General 
+		Montana/U.		Public License 
+		Swansea 
+
+AER RRTMG	Atmospheric		Copyright	AER RRTMG Copyright
+    		and			2002-2010, 
+		Environmental 		Atmospheric 
+		Research, Inc.		and 
+					Environmental 
+					Research, Inc.
+
+MCT		Argonne			Copyright 2000,	MCT Copyright
+		National		2010, 
+		Laboratory		University of 
+					Chicago.
+
+ICSSP		 N/A			Copyright 2003, ISCCP Simulator Software
+		 			2010, Steve 
+					Klein and Mark 
+					Webb
+
+XML/Lite	Wadsack-Allen		Copyright 2001, The documentation for the Perl XML-Lite 
+		Digital Group		2010 	  	module is no longer available on-line. 
+					Wadsack-Allen 
+					Digital Group
+
+Inf_NaN		Lahey			Copyright(c)	Copies of this source code, or standalone compiled 
+_Detection 	Computer		2003, Lahey	files derived from this source may not be sold 
+module		Systems, Inc.		Computer	without permission from Lahey Computers Systems. 
+					Systems, Inc.	All or part of this module may be freely incorporated 
+							into executable programs which are offered for sale. 
+							Otherwise, distribution of all or part of this file is 
+							permitted, provided this copyright notice and header 
+							are included.
+
+
+THIS SOFTWARE IS PROVIDED BY UCAR AND ANY CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL UCAR OR ANY CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
+EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER
+IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+

Externals.cfg

@@ -0,0 +1,36 @@
+[slm]
+local_path = .
+protocol = externals_only
+required = True
+
+[cam]
+tag = trunk_tags/cam5_4_161/components/cam
+protocol = svn
+repo_url = https://svn-ccsm-models.cgd.ucar.edu/cam1
+local_path = components/cam
+required = True
+
+[cice]
+tag = cice5_20180123
+protocol = git
+repo_url = https://github.com/ESCOMP/CESM_CICE5
+local_path = components/cice
+required = True
+
+[rtm]
+tag = rtm1_0_65
+protocol = git
+repo_url = https://github.com/ESCOMP/rtm
+local_path = components/rtm
+required = True
+
+[cime]
+tag = clm4518/n04/cime5.4.0-alpha.03
+protocol = git
+repo_url = https://github.com/CESM-Development/cime
+local_path = cime
+required = True
+
+[externals_description]
+schema_version = 1.0.0
+

LICENSE

@@ -0,0 +1,34 @@
+Copyright (c) 2005-2018, University Corporation for Atmospheric Research (UCAR)
+All rights reserved.
+
+Developed by: 
+              University Corporation for Atmospheric Research - National Center for Atmospheric Research
+              https://www2.cesm.ucar.edu/working-groups/sewg
+
+Permission is hereby granted, free of charge, to any person obtaining 
+a copy of this software and associated documentation files (the "Software"), 
+to deal with the Software without restriction, including without limitation 
+the rights to use, copy, modify, merge, publish, distribute, sublicense, 
+and/or sell copies of the Software, and to permit persons to whom 
+the Software is furnished to do so, subject to the following conditions:
+
+    - Redistributions of source code must retain the above copyright notice, 
+      this list of conditions and the following disclaimers.
+    - Redistributions in binary form must reproduce the above copyright notice, 
+      this list of conditions and the following disclaimers in the documentation 
+      and/or other materials provided with the distribution.
+    - Neither the names of [Name of Development Group, UCAR], 
+      nor the names of its contributors may be used to endorse or promote 
+      products derived from this Software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
+INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
+CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
+POSSIBILITY OF SUCH DAMAGE.

README

@@ -0,0 +1,25 @@
+=============================================================================================
+Important files in main directories:
+=============================================================================================
+
+Externals.cfg --------------- File for management of the main high level externals
+Externals_CLM.cfg ----------- File for management of the CLM specific externals (i.e. FATES)
+
+bld/configure --------------- Script to prepare CLM to be built.
+
+=============================================================================================
+    QUICKSTART: using the CPL7 scripts:
+=============================================================================================
+
+         cd cime/scripts
+         ./create_newcase            # get help on how to run create_newcase
+         ./create_newcase --case testI --res f19_g16 --compset I2000Clm50BgcCrop --mach cheyenne
+                                     # create new "I" case for cheyenne_intel at 1.9x2.5_gx1v7 res
+                                     # "I2000Clm50BgcCrop" case is clm5_0 active, datm8, and inactive ice/ocn
+         cd testI
+         ./case.setup                # create the $CASE.run file
+         ./case.build                # build model and create namelists
+         ./case.submit               # submit script
+                                     # (NOTE: ./xmlchange RESUBMIT=10 to set RESUBMIT to number
+                                     # #  of times to automatically resubmit -- 10 in this example)
+

README.rst

@@ -0,0 +1,3 @@
+================
+SimpleLandModel
+================

README_EXTERNALS.rst

@@ -0,0 +1,107 @@
+Obtaining the full model code and associated scripting infrastructure
+=====================================================================
+
+#. Clone the repository. ::
+
+
+#. Run the script **manage_externals/checkout_externals**. ::
+
+      ./manage_externals/checkout_externals
+
+   The **checkout_externals** script is a package manager that will
+   populate the directory with the relevant versions of each of the
+   components along with the CIME infrastructure code.
+
+At this point you have a working version.
+
+To see full details of how to set up a case, compile and run, see the CIME documentation at http://esmci.github.io/cime/ .
+
+More details on checkout_externals
+----------------------------------
+
+The file **Externals.cfg** in your top-level directory tells
+**checkout_externals** which tag/branch of each component should be
+brought in to generate your sandbox.
+
+**You need to rerun checkout_externals whenever Externals.cfg has
+changed** (unless you have already manually updated the relevant
+external(s) to have the correct branch/tag checked out). Common times
+when this is needed are:
+
+* After checking out a new branch/tag
+
+* After merging some other branch/tag into your currently
+  checked-out branch
+
+**checkout_externals** must be run from the root of the source
+tree. For example, if you cloned with::
+
+  git clone https://github.com/escomp/ctsm.git my_ctsm_sandbox
+
+then you must run **checkout_externals** from
+``/path/to/my_ctsm_sandbox``.
+
+To see more details of **checkout_externals**, issue ::
+
+  ./manage_externals/checkout_externals --help
+
+Customizing your sandbox
+=============================
+
+There are several use cases to consider when you want to customize or modify your sandbox.
+
+Switching to a different branch or tag
+-------------------------------------------
+
+If you have already checked out a branch or tag and **HAVE NOT MADE ANY
+MODIFICATIONS** it is simple to change your sandbox. Say that you
+checked out ctsm1.0.0 but really wanted to have ctsm1.1.0;
+you would simply do the following::
+
+  git checkout ctsm1.1.0
+  ./manage_externals/checkout_externals
+
+You should **not** use this method if you have made any source code
+changes, or if you have any ongoing cases that were created from
+this sandbox. In these cases, it is often easiest to do a second **git
+clone**.
+
+Pointing to a different version of a component
+----------------------------------------------
+
+Each entry in **Externals.cfg** has the following form (we use CIME as an
+example below)::
+
+  [cime]
+  local_path = cime
+  protocol = git
+  repo_url = https://github.com/CESM-Development/cime
+  tag = cime5.4.0-alpha.20
+  required = True
+
+Each entry specifies either a tag or a branch. To point to a new tag:
+
+#. Modify the relevant entry/entries in **Externals.cfg** (e.g., changing
+   ``cime5.4.0-alpha.20`` to ``cime5.4.0-alpha.21`` above)
+
+#. Checkout the new component(s)::
+
+     ./manage_externals/checkout_externals
+
+Keep in mind that changing individual components from a tag may result
+in an invalid model (won't compile, won't run, not scientifically
+meaningful) and is unsupported.
+
+Committing your change to Externals.cfg
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+After making this change, it's a good idea to commit the change in your
+local git repository. First create a branch in your local
+repository, then commit it. (Unlike with subversion, branches are stored
+locally unless you explicitly push them up to github. Feel free to
+create whatever local branches you'd like.) For example::
+
+  git checkout -b my_ctsm_branch
+  git add Externals.cfg
+  git commit -m "Update CIME to cime5.4.0-alpha.20"
+

bld/CESM_cppdefs

@@ -0,0 +1 @@
+