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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    HTML 2.3k 557

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 215 186

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 153 29

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    Shell 53 12

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    HTML 32 11

  6. snakedeploy snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    Python 21 8

Repositories

Showing 10 of 51 repositories
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 215 186 30 28 Updated Dec 3, 2024
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    HTML 2,302 MIT 557 1,050 96 Updated Nov 29, 2024
  • snakemake-storage-plugin-fs Public

    A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync.

    snakemake/snakemake-storage-plugin-fs’s past year of commit activity
    Python 2 MIT 3 2 0 Updated Nov 29, 2024
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 19 MIT 20 26 3 Updated Nov 29, 2024
  • snakemake-wrapper-utils Public

    Utility functions and classes shared between Snakemake wrappers

    snakemake/snakemake-wrapper-utils’s past year of commit activity
    Python 3 MIT 7 0 3 Updated Nov 28, 2024
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    snakemake/snakedeploy’s past year of commit activity
    Python 21 MPL-2.0 8 8 2 Updated Nov 27, 2024
  • snakemake-hpc-teaching-material Public
    snakemake/snakemake-hpc-teaching-material’s past year of commit activity
    TeX 6 CC-BY-SA-4.0 2 13 6 Updated Nov 27, 2024
  • snakemake.github.io Public

    Snakemake homepage

    snakemake/snakemake.github.io’s past year of commit activity
    HTML 3 MIT 4 0 0 Updated Nov 21, 2024
  • poetry-snakemake-plugin Public

    Plugin for poetry that adds snakemake specific functionality

    snakemake/poetry-snakemake-plugin’s past year of commit activity
    Python 2 0 0 3 Updated Nov 6, 2024
  • snakemake-interface-software-deployment-plugins Public

    A stable interface for Snakemake software deployment plugins

    snakemake/snakemake-interface-software-deployment-plugins’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 6, 2024
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