Skip to content

Issues: steineggerlab/foldcomp

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

25 Open 19 Closed
25 Open 19 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Explanation of side chain discretisation
#61 opened Oct 23, 2024 by alex-hh
Error downloading proteome subsets bug Something isn't working
#60 opened Oct 12, 2024 by alex-hh
2
Encode only backbone atoms enhancement New feature or request
#59 opened Oct 10, 2024 by alex-hh
2
Exclude Amino Acid letter During Compression enhancement New feature or request question Further information is requested
#58 opened Aug 21, 2024 by mahdip72
1
Are these not all coords? invalid This doesn't seem right question Further information is requested
#57 opened Jul 11, 2024 by patrickbryant1
1
Errors in highquality_clust30
#56 opened Jul 5, 2024 by valentynbez
3
extracting PDBs
#55 opened Jun 1, 2024 by Yogesh1-11
foldcomp.open - return empty structure string if structure is not found in database bug Something isn't working
#54 opened Apr 1, 2024 by valentynbez
highquality_cluster30 - fragmented sequences split on undetermined aminoacid help wanted Extra attention is needed
#53 opened Mar 27, 2024 by valentynbez
Heads up that pip install from pypi doesn't work with python 3.12 bug Something isn't working
#52 opened Mar 27, 2024 by chasemc
ESMFold database header issues help wanted Extra attention is needed
#51 opened Mar 25, 2024 by valentynbez
1
Multi-chain pdb enhancement New feature or request
#50 opened Mar 24, 2024 by Marc-commits
1
Advice for installation with pip enhancement New feature or request
#49 opened Mar 24, 2024 by miangoar
3
foldcomp compress breaks input pdb file into multiple output files enhancement New feature or request help wanted Extra attention is needed
#47 opened Jan 6, 2024 by vagkaratzas
2
Extraction of FASTA adds unnecessary .pdb extension if absent, which leads to inconsistensies help wanted Extra attention is needed
#45 opened Dec 27, 2023 by valentynbez
2
Database extraction failed help wanted Extra attention is needed
#42 opened Nov 7, 2023 by valentynbez
2
Dealing with nested subdirectories enhancement New feature or request question Further information is requested
#40 opened Oct 18, 2023 by jomimc
2
Subsetting databases bug Something isn't working
#39 opened Aug 9, 2023 by patrickbryant1
7
using foldcomp database with a foldseek search question Further information is requested
#38 opened Jul 25, 2023 by emzodls
1
Multithreaded database query enhancement New feature or request
#36 opened Jun 2, 2023 by valentynbez
Error compresing PDB bug Something isn't working enhancement New feature or request
#35 opened May 29, 2023 by valentynbez
2
Alignment scores enhancement New feature or request
#32 opened Apr 14, 2023 by HrishiDhondge
1
[Feature Request]: JS Decompression enhancement New feature or request
#31 opened Mar 30, 2023 by a-r-j
1
[Question] Why use NeRF over faster alternatives question Further information is requested
#26 opened Mar 27, 2023 by a-r-j
1
AlphaFold DB proteome subset enhancement New feature or request
#24 opened Mar 25, 2023 by kad-ecoli
3
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.