add .dockerignore and combine Docker RUN steps

stevekm · Nov 11, 2020 · f6335c8 · f6335c8
1 parent 0cd112f
commit f6335c8
Show file tree

Hide file tree

Showing 3 changed files with 12 additions and 5 deletions.
diff --git a/.dockerignore b/.dockerignore
@@ -0,0 +1,6 @@
+*.sif
+.dockerignore
+IGV_2.4.10/
+*.zip
+igv.jar
+snapshots/
diff --git a/.gitignore b/.gitignore
@@ -92,3 +92,4 @@ bin*
 test.py
 target.bed
 *.sif
+snapshots/
diff --git a/Dockerfile b/Dockerfile
@@ -17,9 +17,9 @@ ADD . /IGV-snapshot-automator
 ENV PATH="/IGV-snapshot-automator/:/IGV-snapshot-automator/IGV_2.4.10/:${PATH}"
 
 # install IGV via the Makefile
-RUN cd /IGV-snapshot-automator && make install
-
-# make a dummy batch script in order to load the hg19 genome into the container
+# then make a dummy batch script in order to load the hg19 genome into the container
 # https://software.broadinstitute.org/software/igv/PortCommands
-RUN printf 'new\ngenome hg19\nexit\n' > /genome.bat
-RUN xvfb-run --auto-servernum --server-num=1 igv.sh -b /genome.bat
+RUN cd /IGV-snapshot-automator && \
+    make install && \
+    printf 'new\ngenome hg19\nexit\n' > /genome.bat && \
+    xvfb-run --auto-servernum --server-num=1 igv.sh -b /genome.bat