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Merge pull request #57 from sybila/dnf-tweaks
Updates to DNF/CNF methods
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,322 @@ | ||
| targets,factors | ||
| v_APAF1, v_External_Activator | ||
| v_APAF1_CYCS, (v_APAF1 & v_CYCScytoplasm) | ||
| v_APAF1gene, v_TP53nucleus | ||
| v_ATF2, v_External_Activator | ||
| v_Apoptosis, (((v_DNA_Fragmentation | v_Inactive_DNA_Repair) | v_Cell_Shrinkage) | v_Inactivation_of_Protein_Synthesis) | ||
| v_Apoptosome, (v_APAF1_CYCS & v_CASP9) | ||
| v_BAD, v_Mitochondrial_Activator | ||
| v_BAG4, (v_External_Activator | v_TNF_BAG4_TNFRSF1A) | ||
| v_BAG4_TNFRSF1A, (v_BAG4 & v_TNFRSF1A) | ||
| v_BAK1, v_Mitochondrial_Activator | ||
| v_BAK1gene, v_IRF5_IRF5nucleus | ||
| v_BAX, v_Mitochondrial_Activator | ||
| v_BBC3gene, v_TP53nucleus | ||
| v_BCL2, v_Mitochondrial_Activator | ||
| v_BCL2A1, v_RELAp65_NFBK1p50nucleus | ||
| v_BCL2A1gene, v_RELAp65_NFBK1p50nucleus | ||
| v_BCL2L1_BAD, (v_BCL2L1mitochondria & v_BAD) | ||
| v_BCL2L1gene, v_RELAp65_NFBK1p50nucleus | ||
| v_BCL2L1mitochondria, v_Mitochondrial_Activator | ||
| v_BCL2_BAX, (v_BCL2 & v_BAX) | ||
| v_BCL3, v_External_Activator | ||
| v_BCL3_NFKB2p52_NFKB2p52, (v_BCL3 & v_NFKB2p52_NFKB2p52nucleus) | ||
| v_BID, v_External_Activator | ||
| v_BIRC2, v_External_Activator | ||
| v_BIRC3gene, v_RELAp65_NFBK1p50nucleus | ||
| v_BIRC4cytoplasm, !(v_DIABLOcytoplasm | v_HTRA2cytoplasm) | ||
| v_BIRC4gene, v_RELAp65_NFBK1p50nucleus | ||
| v_Bacteria, v_Bacteria | ||
| v_CASP1, (v_ProCASP1 & v_CASP4) | ||
| v_CASP10, (v_ProCASP10 & v_TNF_TNFRSF1A_FADD_TRADD) | ||
| v_CASP2, (v_ProCASP2 & v_Fragmented_DNAcytoplasm) | ||
| v_CASP3_Activator, v_CASP3_Activator | ||
| v_CASP3cytoplasm, (v_ProCASP3 & ((v_CASP8 | v_CASP4) | v_Apoptosome)) | ||
| v_CASP3gene, (v_IRF5_IRF5nucleus | v_CASP3cytoplasm) | ||
| v_CASP3nucleus, v_CASP3cytoplasm | ||
| v_CASP4, v_ProCASP4 | ||
| v_CASP6_Activator, v_CASP6_Activator | ||
| v_CASP6cytoplasm, (v_ProCASP6 & v_CASP9) | ||
| v_CASP6nucleus, v_CASP6cytoplasm | ||
| v_CASP7_Activator, v_CASP7_Activator | ||
| v_CASP7cytoplasm, (v_ProCASP7 & ((v_CASP8 | v_Apoptosome) | v_CASP10)) | ||
| v_CASP7nucleus, v_CASP7cytoplasm | ||
| v_CASP8, (v_ProCASP8 & (((v_TNFSF10_TNFSF10B_FADD | v_FASLG_FAS_FADD_FAF1_DAXX) | v_FASLG_FAS_FADD_FAF1_DAXX_CFLAR) | v_TNFSF10_TNFRSF10A_FADD)) | ||
| v_CASP9, v_CASP6_Activator | ||
| v_CBP, (v_EP300 & v_CREBBP) | ||
| v_CCL5gene, v_IRF1_IRF1nucleus | ||
| v_CD40, v_External_Activator | ||
| v_CD40LG, v_CD40LG | ||
| v_CD40_CD40LG, (v_CD40 & v_CD40LG) | ||
| v_CD40_CD40LG_TRAF3, (v_CD40_CD40LG & v_TRAF3) | ||
| v_CFLAR, v_External_Activator | ||
| v_CFLARgene, v_RELAp65_NFBK1p50nucleus | ||
| v_CHUK, v_External_Activator | ||
| v_CHUK_CHUK, (v_CHUK & v_MAP3K14) | ||
| v_CIITAgene, (v_IRF1_IRF1nucleus | v_IRF2) | ||
| v_CKII, v_IRF1_IRF1_Activator | ||
| v_CREBBP, v_External_Activator | ||
| v_CXCL10gene, (v_ISGF3nucleus | (v_CBP & (v_IRF3_IRF7nucleus | v_IRF3_IRF3nucleus))) | ||
| v_CXCL11gene, v_IRF5_IRF5nucleus | ||
| v_CXCL9gene, v_STAT1_STAT1nucleus_p2 | ||
| v_CYBBgene, (v_IRF8 & v_SPI1) | ||
| v_CYCScytoplasm, (v_CYCSmytochondria & ((v_BAK1 | v_tBID) | v_BAX)) | ||
| v_CYCSmytochondria, v_Mitochondrial_Activator | ||
| v_Cell_Shrinkage, (v_cGAS2 | v_cLMNA) | ||
| v_DAXX, v_External_Activator | ||
| v_DFFA, v_External_Activator | ||
| v_DIABLOcytoplasm, (v_DIABLOmitochondria & ((v_BAK1 | v_tBID) | v_BAX)) | ||
| v_DIABLOmitochondria, v_Mitochondrial_Activator | ||
| v_DNA, v_External_Activator | ||
| v_DNA_Fragmentation, (v_Fragmented_DNAnucleus | v_IDFFA) | ||
| v_Diacyl_Lipopeptides, v_Bacteria | ||
| v_EIF2AK2_PRKRA, (v_EIF2AK2cytoplasm & v_PRKRA) | ||
| v_EIF2AK2cytoplasm, v_dsRNA | ||
| v_EIF2AK2gene, (v_ISGF3nucleus | v_IRF1_IRF1nucleus) | ||
| v_EIF2S1, v_EIF2AK2gene | ||
| v_ENDOGcytoplasm, (v_tBID & v_ENDOGmitochondria) | ||
| v_ENDOGmitochondria, v_Mitochondrial_Activator | ||
| v_ENDOGnucleus, v_ENDOGcytoplasm | ||
| v_EP300, v_External_Activator | ||
| v_External_Activator, v_External_Activator | ||
| v_FADD, v_External_Activator | ||
| v_FAF1, v_External_Activator | ||
| v_FAS, v_External_Activator | ||
| v_FASLG, v_FASLG | ||
| v_FASLG_FAS, (v_FASLG & v_FAS) | ||
| v_FASLG_FAS_FADD_FAF1_DAXX, (v_FASLG_FAS & ((v_FADD & v_FAF1) & v_DAXX)) | ||
| v_FASLG_FAS_FADD_FAF1_DAXX_CFLAR, (v_FASLG_FAS_FADD_FAF1_DAXX & v_CFLAR) | ||
| v_FASLGgene, (v_IRF1_IRF1nucleus | v_TP53nucleus) | ||
| v_FASgene, v_RELAp65_NFBK1p50nucleus | ||
| v_Flagellin, v_Bacteria | ||
| v_Fragmented_DNAcytoplasm, v_DNA_Fragmentation | ||
| v_Fragmented_DNAnucleus, (v_DNA & (v_ENDOGnucleus | v_PDCD8nucleus)) | ||
| v_G1P2gene, (((v_ISGF3nucleus | (v_IRF2 & ((v_SPI1 & v_IRF4) & v_IRF8))) | (v_CBP & (v_IRF3_IRF7nucleus | v_IRF3_IRF3nucleus))) | (v_IRF1_IRF1nucleus & ((v_SPI1 & v_IRF4) & v_IRF8))) | ||
| v_G1P3gene, v_IRF8 | ||
| v_GAS2, v_External_Activator | ||
| v_GBP1gene, (v_IRF2 | v_IRF1_IRF1nucleus) | ||
| v_HIST2H4gene, (v_IRF1_IRF1nucleus | v_IRF2) | ||
| v_HLA_Bgene, v_IRF8 | ||
| v_HSPA1A, v_External_Activator | ||
| v_HTRA2cytoplasm, (v_tBID & v_HTRA2mitochondria) | ||
| v_HTRA2mitochondria, v_Mitochondrial_Activator | ||
| v_ICAM1gene, v_STAT1_STAT1nucleus_p2 | ||
| v_IDFFA, (v_DFFA & v_CASP3nucleus) | ||
| v_IER3gene, v_RELAp65_NFBK1p50nucleus | ||
| v_IFIT1gene, v_IRF5_IRF5nucleus | ||
| v_IFIT2gene, ((v_CBP & (v_IRF3_IRF7nucleus | v_IRF3_IRF3nucleus)) | v_ISGF3nucleus) | ||
| v_IFNA, v_IFNA | ||
| v_IFNAR, ((v_IFNA & (((v_TYK2 & v_IFNAR1) & v_IFNAR2) & v_JAK1)) | (v_IFNB1 & (((v_TYK2 & v_IFNAR1) & v_IFNAR2) & v_JAK1))) | ||
| v_IFNAR1, v_External_Activator | ||
| v_IFNAR2, v_External_Activator | ||
| v_IFNA_IFNA, v_IFNA | ||
| v_IFNAgene, (((((((v_IRF5_IRF5nucleus | v_IRF7_IRF7nucleus) | v_IRF3_IRF5nucleus) | v_STAT1_STAT1_IRF9nucleus) | v_IRF1_IRF1nucleus) | v_IRF3_IRF3nucleus) | v_IRF3_IRF7nucleus) | v_ISGF3nucleus) | ||
| v_IFNB1, v_IFNB1 | ||
| v_IFNB1_IFNB1, v_IFNB1 | ||
| v_IFNB1gene, ((((((v_RELAp65_NFBK1p50nucleus & (((v_IRF3_IRF7nucleus & v_IRF3_IRF3nucleus) & v_ATF2) & v_CBP)) | v_IRF5_IRF5nucleus) | v_IRF1_IRF1nucleus) | v_IRF3_IRF3nucleus) | v_ISGF3nucleus) | v_STAT1_STAT1nucleus_p2) | ||
| v_IFNG, v_IFNG | ||
| v_IFNGR, (v_IFNG & ((v_IFNGR2 & v_JAK2) & v_IFNGR1)) | ||
| v_IFNGR1, v_External_Activator | ||
| v_IFNGR2, v_External_Activator | ||
| v_IFR5gene, (v_STAT1_STAT1_IRF9nucleus | v_TP53nucleus) | ||
| v_IKBKB, v_External_Activator | ||
| v_IKBKE, v_External_Activator | ||
| v_IKBKE_TBK1, (v_TLR4_TICAM1_TICAM2 & (v_IKBKE & v_TBK1)) | ||
| v_IKBKG, v_External_Activator | ||
| v_IKBKG_CHUK_IKBKB, ((v_TLR3_TICAM1_TICAM2_RIPK1_RIPK3 & ((v_CHUK & v_IKBKB) & v_IKBKG)) | (v_IKBKG & ((v_CHUK & v_IKBKB) & v_MAP3K7IP1_MAP3K7IP2_MAP3K7))) | ||
| v_IL12Bgene, v_IRF1_IRF1nucleus | ||
| v_IL15gene, v_IRF1_IRF1nucleus | ||
| v_IL1Bgene, (v_IRF8 & v_SPI1) | ||
| v_IL1R1, v_External_Activator | ||
| v_ILIB, v_ILIB | ||
| v_ILIB_IL1R1, (v_ILIB & v_IL1R1) | ||
| v_ILIB_IL1R1_MYD88_IRAK1_IRAK4, (v_ILIB_IL1R1 & ((v_IRAK1 & v_MYD88) & v_IRAK4)) | ||
| v_ILIB_IL1R1_MYD88_IRAK1_IRAK4_TRAF6, (v_ILIB_IL1R1_MYD88_IRAK1_IRAK4 & v_TRAF6) | ||
| v_IPARP, (v_PARP & (v_CASP7nucleus | v_CASP3nucleus)) | ||
| v_IRAK1, v_External_Activator | ||
| v_IRAK2, v_External_Activator | ||
| v_IRAK4, v_External_Activator | ||
| v_IRF1_IRF1_Activator, v_IRF1_IRF1_Activator | ||
| v_IRF1_IRF1cytoplasm, v_IRF1cytoplasm | ||
| v_IRF1_IRF1nucleus, v_IRF1_IRF1cytoplasm | ||
| v_IRF1cytoplasm, ((v_PKA | v_CKII) | v_PKC) | ||
| v_IRF1gene, v_STAT1_STAT1nucleus_p2 | ||
| v_IRF2, v_IRF2_Activator | ||
| v_IRF2_Activator, v_IRF2_Activator | ||
| v_IRF2gene, v_IRF1_IRF1nucleus | ||
| v_IRF3, (v_TLR3_TICAM1_TICAM2_TBK1 | v_IKBKE_TBK1) | ||
| v_IRF3_IRF3cytoplasm, v_IRF3 | ||
| v_IRF3_IRF3nucleus, v_IRF3_IRF3cytoplasm | ||
| v_IRF3_IRF5cytoplasm, v_IRF5 | ||
| v_IRF3_IRF5nucleus, v_IRF3_IRF5cytoplasm | ||
| v_IRF3_IRF7cytoplasm, (v_IRF3 & v_IRF7) | ||
| v_IRF3_IRF7nucleus, v_IRF3_IRF7cytoplasm | ||
| v_IRF4, v_External_Activator | ||
| v_IRF5, ((v_TLR7_MYD88_TRAF6_IRF5 | v_Virus) | v_TLR9_MYD88_TRAF6_IRF5) | ||
| v_IRF5_IRF5cytoplasm, v_IRF5 | ||
| v_IRF5_IRF5nucleus, v_IRF5_IRF5cytoplasm | ||
| v_IRF5_IRF7cytoplasm, v_IRF5 | ||
| v_IRF5_IRF7nucleus, v_IRF5_IRF7cytoplasm | ||
| v_IRF7, v_IKBKE_TBK1 | ||
| v_IRF7_IRF7cytoplasm, v_IRF7 | ||
| v_IRF7_IRF7nucleus, v_IRF7_IRF7cytoplasm | ||
| v_IRF8, (v_IRF1_IRF1nucleus | v_IRF2) | ||
| v_IRF9, v_External_Activator | ||
| v_ISGF3cytoplasm, (v_STAT1_STAT2 & v_IRF9) | ||
| v_ISGF3nucleus, v_ISGF3cytoplasm | ||
| v_Inactivation_of_Protein_Synthesis, v_EIF2S1 | ||
| v_Inactive_DNA_Repair, v_IPARP | ||
| v_JAK1, v_External_Activator | ||
| v_JAK2, v_External_Activator | ||
| v_LMNA, v_External_Activator | ||
| v_LPS, v_Bacteria | ||
| v_MAP3K14, ((v_CD40_CD40LG_TRAF3 | v_TNF_TNFRSF1B_TRAF2) | v_TNFSF13B_TNFRSF17_TRAF5) | ||
| v_MAP3K7, v_External_Activator | ||
| v_MAP3K7IP1, v_External_Activator | ||
| v_MAP3K7IP1_MAP3K7IP2_MAP3K7, (((((((v_ILIB_IL1R1_MYD88_IRAK1_IRAK4_TRAF6 & ((v_MAP3K7IP1 & v_MAP3K7IP2) & v_MAP3K7)) | (v_TLR7_MYD88_IRAK1_IRAK4_TRAF6 & ((v_MAP3K7IP1 & v_MAP3K7IP2) & v_MAP3K7))) | (v_TLR3_TICAM1_TICAM2_TRAF6 & ((v_MAP3K7IP1 & v_MAP3K7IP2) & v_MAP3K7))) | (v_TLR9_MYD88_IRAK1_IRAK4_TRAF6 & ((v_MAP3K7IP1 & v_MAP3K7IP2) & v_MAP3K7))) | (v_TLR2_TLR6_TOLLIP_MYD88_IRAK1_IRAK4_TRAF6 & ((v_MAP3K7IP1 & v_MAP3K7IP2) & v_MAP3K7))) | (v_TLR5_MYD88_IRAK1_IRAK4_TRAF6 & ((v_MAP3K7IP1 & v_MAP3K7IP2) & v_MAP3K7))) | (v_TLR1_TLR2_TIRAP_MYD88_IRAK2_IRAK1_IRAK4_TRAF6 & ((v_MAP3K7IP1 & v_MAP3K7IP2) & v_MAP3K7))) | ||
| v_MAP3K7IP2, v_External_Activator | ||
| v_MDM2gene, v_TP53nucleus | ||
| v_MYD88, v_External_Activator | ||
| v_Mitochondrial_Activator, v_Mitochondrial_Activator | ||
| v_NFKB1_p50, v_RELA_NFKB1_Activator | ||
| v_NFKB2p100, v_External_Activator | ||
| v_NFKB2p100_NFKB2p100_Ub, (v_NFKB2p100_NFKB2p100cytoplasm & v_Ub) | ||
| v_NFKB2p100_NFKB2p100cytoplasm, (v_NFKB2p100 & v_IKBKG_CHUK_IKBKB) | ||
| v_NFKB2p100_RELB_Ub, (v_NFKB2p100_RELBcytoplasm & v_Ub) | ||
| v_NFKB2p100_RELBcytoplasm, (v_NFKB2p100 & (v_RELB & v_CHUK_CHUK)) | ||
| v_NFKB2p52_NFKB2p52cytoplasm, (v_NFKB2p100_NFKB2p100_Ub & v_Proteasome) | ||
| v_NFKB2p52_NFKB2p52nucleus, v_NFKB2p52_NFKB2p52cytoplasm | ||
| v_NFKB2p52_RELBcytoplasm, (v_NFKB2p100_RELB_Ub & v_Proteasome) | ||
| v_NFKB2p52_RELBnucleus, v_NFKB2p52_RELBcytoplasm | ||
| v_NFKBIA, (v_RELA_NFKB1_Activator | v_NFKBIA_RELAp65_NFKB1p50) | ||
| v_NFKBIA_RELAp65_NFKB1p50, ((v_TNF_IKBKG_Complex & ((v_NFKBIA & v_RELA_p65) & v_NFKB1_p50)) | (v_IKBKG_CHUK_IKBKB & ((v_NFKBIA & v_RELA_p65) & v_NFKB1_p50))) | ||
| v_NOS2Agene, v_External_Activator | ||
| v_OAS1gene, (((v_ISGF3nucleus | v_IRF5_IRF5nucleus) | v_IRF8) | v_IRF1_IRF1nucleus) | ||
| v_PARP, v_External_Activator | ||
| v_PDCD8_HSPA1A, (v_PDCD8cytoplasm & v_HSPA1A) | ||
| v_PDCD8cytoplasm, (v_tBID & v_PDCD8mitochondria) | ||
| v_PDCD8mitochondria, v_Mitochondrial_Activator | ||
| v_PDCD8nucleus, v_PDCD8cytoplasm | ||
| v_PKA, v_IRF1_IRF1_Activator | ||
| v_PKC, v_IRF1_IRF1_Activator | ||
| v_PLSCR1gene, v_IRF5_IRF5nucleus | ||
| v_PMAIPgene, v_IRF5_IRF5nucleus | ||
| v_PRKCD, v_External_Activator | ||
| v_PRKCZ, v_External_Activator | ||
| v_PRKRA, v_External_Activator | ||
| v_PRKRAgene, v_IRF5_IRF5nucleus | ||
| v_PSMB9gene, (v_IRF1_IRF1nucleus | v_IRF2) | ||
| v_PTP, v_External_Activator | ||
| v_PTPN2, v_External_Activator | ||
| v_ProCASP1, v_External_Activator | ||
| v_ProCASP10, v_External_Activator | ||
| v_ProCASP2, v_External_Activator | ||
| v_ProCASP3, v_CASP3_Activator | ||
| v_ProCASP4, v_External_Activator | ||
| v_ProCASP6, v_CASP6_Activator | ||
| v_ProCASP7, v_CASP7_Activator | ||
| v_ProCASP8, v_External_Activator | ||
| v_Proteasome, v_External_Activator | ||
| v_RELA_NFKB1_Activator, v_RELA_NFKB1_Activator | ||
| v_RELA_p65, v_RELA_NFKB1_Activator | ||
| v_RELAp65_NFBK1p50nucleus, v_RELAp65_NFKB1p50cytoplasm | ||
| v_RELAp65_NFKB1p50cytoplasm, (v_NFKBIA_RELAp65_NFKB1p50 & (((((v_TBK1 | v_CHUK) | v_IKBKB) | v_MAP3K7) | v_RPS6KA5) | v_PRKCZ)) | ||
| v_RELB, v_External_Activator | ||
| v_RIPK1, v_External_Activator | ||
| v_RIPK1gene, v_IRF5_IRF5nucleus | ||
| v_RIPK3, v_External_Activator | ||
| v_RPS6KA5, v_External_Activator | ||
| v_SOCS1, v_External_Activator | ||
| v_SOCS3, v_External_Activator | ||
| v_SOD2gene, v_RELAp65_NFBK1p50nucleus | ||
| v_SP100gene, v_IRF5_IRF5nucleus | ||
| v_SPI1, v_External_Activator | ||
| v_STAT1, v_IFNGR | ||
| v_STAT1_STAT1_IRF9cytoplasm, (v_STAT1 & v_IRF9) | ||
| v_STAT1_STAT1_IRF9nucleus, v_STAT1_STAT1_IRF9cytoplasm | ||
| v_STAT1_STAT1cytoplasm, (v_STAT1 & v_PRKCD) | ||
| v_STAT1_STAT1nucleus_p1, v_STAT1_STAT1cytoplasm | ||
| v_STAT1_STAT1nucleus_p2, v_STAT1_STAT1nucleus_p1 | ||
| v_STAT1_STAT2, (v_STAT1 & v_STAT2) | ||
| v_STAT1gene, v_IRF1_IRF1nucleus | ||
| v_STAT2, v_IFNAR | ||
| v_TAP1gene, (v_IRF2 | v_IRF1_IRF1nucleus) | ||
| v_TBK1, v_External_Activator | ||
| v_TICAM1, v_External_Activator | ||
| v_TICAM2, v_External_Activator | ||
| v_TIRAP, v_External_Activator | ||
| v_TLR1_TLR2, v_Triacyl_Lipopeptides | ||
| v_TLR1_TLR2_TIRAP_MYD88_IRAK2_IRAK1_IRAK4, (v_TLR1_TLR2 & ((((v_IRAK2 & v_TIRAP) & v_IRAK1) & v_MYD88) & v_IRAK4)) | ||
| v_TLR1_TLR2_TIRAP_MYD88_IRAK2_IRAK1_IRAK4_TRAF6, (v_TLR1_TLR2_TIRAP_MYD88_IRAK2_IRAK1_IRAK4 & v_TRAF6) | ||
| v_TLR2, v_External_Activator | ||
| v_TLR2_TLR6, (v_TLR2 & (v_TLR6 & v_Diacyl_Lipopeptides)) | ||
| v_TLR2_TLR6_TOLLIP_MYD88_IRAK1_IRAK4, (v_TLR2_TLR6 & (((v_TOLLIP & v_IRAK1) & v_MYD88) & v_IRAK4)) | ||
| v_TLR2_TLR6_TOLLIP_MYD88_IRAK1_IRAK4_TRAF6, (v_TLR2_TLR6_TOLLIP_MYD88_IRAK1_IRAK4 & v_TRAF6) | ||
| v_TLR3, v_External_Activator | ||
| v_TLR3_TICAM1_TICAM2, (v_TLR3_TLR3 & (v_TICAM2 & v_TICAM1)) | ||
| v_TLR3_TICAM1_TICAM2_RIPK1, (v_TLR3_TICAM1_TICAM2 & v_RIPK1) | ||
| v_TLR3_TICAM1_TICAM2_RIPK1_RIPK3, (v_TLR3_TICAM1_TICAM2_RIPK1 & v_RIPK3) | ||
| v_TLR3_TICAM1_TICAM2_TBK1, (v_TLR3_TICAM1_TICAM2 & v_TBK1) | ||
| v_TLR3_TICAM1_TICAM2_TRAF6, (v_TLR3_TICAM1_TICAM2 & v_TRAF6) | ||
| v_TLR3_TLR3, (v_dsRNA & v_TLR3) | ||
| v_TLR4, v_LPS | ||
| v_TLR4_TICAM1_TICAM2, (v_TLR4 & (v_TICAM2 & v_TICAM1)) | ||
| v_TLR5, v_External_Activator | ||
| v_TLR5_MYD88_IRAK1_IRAK4, (v_TLR5_TLR5 & ((v_IRAK1 & v_MYD88) & v_IRAK4)) | ||
| v_TLR5_MYD88_IRAK1_IRAK4_TRAF6, (v_TLR5_MYD88_IRAK1_IRAK4 & v_TRAF6) | ||
| v_TLR5_TLR5, (v_TLR5 & v_Flagellin) | ||
| v_TLR6, v_External_Activator | ||
| v_TLR7, v_External_Activator | ||
| v_TLR7_MYD88_IRAK1_IRAK4, (v_TLR7_TLR7 & ((v_IRAK1 & v_MYD88) & v_IRAK4)) | ||
| v_TLR7_MYD88_IRAK1_IRAK4_TRAF6, (v_TLR7_MYD88_IRAK1_IRAK4 & v_TRAF6) | ||
| v_TLR7_MYD88_TRAF6_IRF5, ((v_TLR7_TLR7 & (v_TRAF6 & v_MYD88)) & !v_IRF5) | ||
| v_TLR7_TLR7, (v_TLR7 & v_ssRNA) | ||
| v_TLR9, v_External_Activator | ||
| v_TLR9_MYD88_IRAK1_IRAK4, (v_TLR9_TLR9 & ((v_IRAK1 & v_MYD88) & v_IRAK4)) | ||
| v_TLR9_MYD88_IRAK1_IRAK4_TRAF6, (v_TLR9_MYD88_IRAK1_IRAK4 & v_TRAF6) | ||
| v_TLR9_MYD88_TRAF6, v_TLR9_MYD88_IRAK1_IRAK4_TRAF6 | ||
| v_TLR9_MYD88_TRAF6_IRF5, ((v_TLR9_TLR9 & (v_TRAF6 & v_MYD88)) & !v_IRF5) | ||
| v_TLR9_TLR9, (v_TLR9 & v_Viral_Bacterial_CpG) | ||
| v_TNF, v_TNF | ||
| v_TNFRSF10A, v_External_Activator | ||
| v_TNFRSF10B, v_External_Activator | ||
| v_TNFRSF10Bgene, v_TP53nucleus | ||
| v_TNFRSF17, v_External_Activator | ||
| v_TNFRSF1A, v_External_Activator | ||
| v_TNFRSF1B, v_External_Activator | ||
| v_TNFSF10, v_TNFSF10 | ||
| v_TNFSF10_TNFRSF10A, (v_TNFSF10 & v_TNFRSF10A) | ||
| v_TNFSF10_TNFRSF10A_FADD, (v_TNFSF10_TNFRSF10A & v_FADD) | ||
| v_TNFSF10_TNFSF10B, (v_TNFSF10 & v_TNFRSF10B) | ||
| v_TNFSF10_TNFSF10B_FADD, (v_TNFSF10_TNFSF10B & v_FADD) | ||
| v_TNFSF10gene, (v_IRF5_IRF5nucleus | v_IRF1_IRF1nucleus) | ||
| v_TNFSF13B, v_TNFSF13B | ||
| v_TNFSF13B_TNFRSF17, (v_TNFSF13B & v_TNFRSF17) | ||
| v_TNFSF13B_TNFRSF17_TRAF5, (v_TNFSF13B_TNFRSF17 & v_TRAF5) | ||
| v_TNF_BAG4_TNFRSF1A, (v_TNF & v_BAG4_TNFRSF1A) | ||
| v_TNF_IKBKG_Complex, (v_TNF_TNFRSF1A_FADD_TRADD_TRAF2_RIPK1 & ((v_CHUK & v_IKBKB) & v_IKBKG)) | ||
| v_TNF_TNFRSF1A, v_TNF_BAG4_TNFRSF1A | ||
| v_TNF_TNFRSF1A_FADD_TRADD, (v_TNF_TNFRSF1A & (v_FADD & v_TRADD)) | ||
| v_TNF_TNFRSF1A_FADD_TRADD_TRAF2_RIPK1, (v_TNF_TNFRSF1A_FADD_TRADD & (v_RIPK1 & v_TRAF2cytoplasm)) | ||
| v_TNF_TNFRSF1B, (v_TNF & v_TNFRSF1B) | ||
| v_TNF_TNFRSF1B_TRAF2, (v_TNF_TNFRSF1B & v_TRAF2cytoplasm) | ||
| v_TOLLIP, v_External_Activator | ||
| v_TP53cytoplasm, v_EIF2AK2_PRKRA | ||
| v_TP53nucleus, v_TP53cytoplasm | ||
| v_TRADD, v_External_Activator | ||
| v_TRAF1gene, v_RELAp65_NFBK1p50nucleus | ||
| v_TRAF2cytoplasm, v_External_Activator | ||
| v_TRAF2gene, v_RELAp65_NFBK1p50nucleus | ||
| v_TRAF3, v_External_Activator | ||
| v_TRAF5, v_External_Activator | ||
| v_TRAF6, v_External_Activator | ||
| v_TYK2, v_External_Activator | ||
| v_Triacyl_Lipopeptides, v_Bacteria | ||
| v_Ub, v_External_Activator | ||
| v_Viral_Bacterial_CpG, (v_Virus | v_Bacteria) | ||
| v_Virus, v_Virus | ||
| v_cGAS2, (v_GAS2 & v_CASP3nucleus) | ||
| v_cLMNA, (v_LMNA & v_CASP6nucleus) | ||
| v_dsRNA, v_Virus | ||
| v_ssRNA, v_Virus | ||
| v_tBID, (v_BID & (v_CASP8 | v_CASP2)) |
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