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Added the last three new/old mapping files
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egonw committed Nov 2, 2021
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48 changes: 48 additions & 0 deletions gene.json
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Expand Up @@ -163,13 +163,29 @@
"doi": "10.5281/zenodo.3667670",
"license": "https://zenodo.org/record/3667670/files/LICENSE?download=1"
},
{
"species": "Populus trichocarpa",
"file": "Pi_Derby_Ensembl_Plant_32.bridge",
"downloadURL": "https://zenodo.org/record/5638771/files/Pi_Derby_Ensembl_Plant_32.bridge?download=1",
"doi": "10.5281/zenodo.5638771",
"license": "https://zenodo.org/record/5638771/files/LICENSE?download=1",
"size": "212.5 MB"
},
{
"species": "Pan troglodytes",
"file": "Pt_Derby_Ensembl_91.bridge",
"downloadURL": "https://zenodo.org/record/3667670/files/Pt_Derby_Ensembl_91.bridge?download=1",
"doi": "10.5281/zenodo.3667670",
"license": "https://zenodo.org/record/3667670/files/LICENSE?download=1"
},
{
"species": "Equus caballus",
"file": "Qc_Derby_Ensembl_85.bridge",
"downloadURL": "https://zenodo.org/record/5638771/files/Qc_Derby_Ensembl_85.bridge?download=1",
"doi": "10.5281/zenodo.5638771",
"license": "https://zenodo.org/record/5638771/files/LICENSE?download=1",
"size": "102.3 MB"
},
{
"species": "Rattus norvegicus",
"file": "Rn_Derby_Ensembl_91.bridge",
Expand All @@ -184,6 +200,38 @@
"doi": "10.5281/zenodo.3667670",
"license": "https://zenodo.org/record/3667670/files/LICENSE?download=1"
},
{
"species": "Solanum lycopersicum",
"file": "Sl_Derby_Ensembl_Plant_32.bridge",
"downloadURL": "https://zenodo.org/record/5638771/files/Sl_Derby_Ensembl_Plant_32.bridge?download=1",
"doi": "10.5281/zenodo.5638771",
"license": "https://zenodo.org/record/5638771/files/LICENSE?download=1",
"size": "59.0 MB"
},
{
"species": "Sus scrofa",
"file": "Ss_Derby_Ensembl_85.bridge",
"downloadURL": "https://zenodo.org/record/5638771/files/Ss_Derby_Ensembl_85.bridge?download=1",
"doi": "10.5281/zenodo.5638771",
"license": "https://zenodo.org/record/5638771/files/LICENSE?download=1",
"size": "117.7 MB"
},
{
"species": "Vitis vinifera",
"file": "Vv_Derby_Ensembl_Plant_32.bridge",
"downloadURL": "https://zenodo.org/record/5638771/files/Vv_Derby_Ensembl_Plant_32.bridge?download=1",
"doi": "10.5281/zenodo.5638771",
"license": "https://zenodo.org/record/5638771/files/LICENSE?download=1",
"size": "109.7 MB"
},
{
"species": "Xenopus tropicalis",
"file": "Xt_Derby_Ensembl_85.bridge",
"downloadURL": "https://zenodo.org/record/5638771/files/Xt_Derby_Ensembl_85.bridge?download=1",
"doi": "10.5281/zenodo.5638771",
"license": "https://zenodo.org/record/5638771/files/LICENSE?download=1",
"size": "79.1 MB"
},
{
"species": "Zea mays",
"file": "Zm_Derby_Ensembl_Plant_39.bridge",
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6 changes: 6 additions & 0 deletions gene.json.config
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Expand Up @@ -20,7 +20,13 @@ Mycobacterium tuberculosis Mx_Derby_Ensembl_85.bridge
Ornithorhynchus anatinus Oa_Derby_Ensembl_85.bridge
Oryza indica Oi_Derby_Ensembl_Plant_32.bridge
Oryza japonica Oj_Derby_Ensembl_Plant_39.bridge
Populus trichocarpa Pi_Derby_Ensembl_Plant_32.bridge
Pan troglodytes Pt_Derby_Ensembl_91.bridge
Equus caballus Qc_Derby_Ensembl_85.bridge
Rattus norvegicus Rn_Derby_Ensembl_91.bridge
Saccharomyces cerevisiae Sc_Derby_Ensembl_91.bridge
Solanum lycopersicum Sl_Derby_Ensembl_Plant_32.bridge
Sus scrofa Ss_Derby_Ensembl_85.bridge
Vitis vinifera Vv_Derby_Ensembl_Plant_32.bridge
Xenopus tropicalis Xt_Derby_Ensembl_85.bridge
Zea mays Zm_Derby_Ensembl_Plant_39.bridge
6 changes: 6 additions & 0 deletions gene_database/readme.md
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Expand Up @@ -33,9 +33,15 @@ for hosting the data.
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Oa_Derby_Ensembl_85.bridge","description": "BridgeDb identifier mapping file for Ornithorhynchus anatinus for genes and proteins","identifier": "10.5281/zenodo.5638771/Oa_Derby_Ensembl_85.bridge","license": "https://zenodo.org/record/5638771/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Ornithorhynchus anatinus, gene, protein","url": "https://doi.org/10.5281/zenodo.5638771","distribution": [ { "@type": "DataDownload", "name": "Oa_Derby_Ensembl_85.bridge", "contentURL": "https://zenodo.org/record/5638771/files/Oa_Derby_Ensembl_85.bridge?download=1" } ],"isAccessibleForFree": true}</script> Ornithorhynchus anatinus | [Oa_Derby_Ensembl_85.bridge](https://zenodo.org/record/5638771/files/Oa_Derby_Ensembl_85.bridge?download=1) | 88.2 MB| (doi:[10.5281/zenodo.5638771](https://doi.org/10.5281/zenodo.5638771)) | [license](https://zenodo.org/record/5638771/files/LICENSE?download=1) |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Oi_Derby_Ensembl_Plant_32.bridge","description": "BridgeDb identifier mapping file for Oryza indica for genes and proteins","identifier": "10.5281/zenodo.5638771/Oi_Derby_Ensembl_Plant_32.bridge","license": "https://zenodo.org/record/5638771/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Oryza indica, gene, protein","url": "https://doi.org/10.5281/zenodo.5638771","distribution": [ { "@type": "DataDownload", "name": "Oi_Derby_Ensembl_Plant_32.bridge", "contentURL": "https://zenodo.org/record/5638771/files/Oi_Derby_Ensembl_Plant_32.bridge?download=1" } ],"isAccessibleForFree": true}</script> Oryza indica | [Oi_Derby_Ensembl_Plant_32.bridge](https://zenodo.org/record/5638771/files/Oi_Derby_Ensembl_Plant_32.bridge?download=1) | 124.6 MB| (doi:[10.5281/zenodo.5638771](https://doi.org/10.5281/zenodo.5638771)) | [license](https://zenodo.org/record/5638771/files/LICENSE?download=1) |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Oj_Derby_Ensembl_Plant_39.bridge","description": "BridgeDb identifier mapping file for Oryza japonica for genes and proteins","identifier": "10.5281/zenodo.3667670/Oj_Derby_Ensembl_Plant_39.bridge","license": "https://zenodo.org/record/3667670/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Oryza japonica, gene, protein","url": "https://doi.org/10.5281/zenodo.3667670","distribution": [ { "@type": "DataDownload", "name": "Oj_Derby_Ensembl_Plant_39.bridge", "contentURL": "https://zenodo.org/record/3667670/files/Oj_Derby_Ensembl_Plant_39.bridge?download=1" } ],"isAccessibleForFree": true}</script> Oryza japonica | [Oj_Derby_Ensembl_Plant_39.bridge](https://zenodo.org/record/3667670/files/Oj_Derby_Ensembl_Plant_39.bridge?download=1) | | (doi:[10.5281/zenodo.3667670](https://doi.org/10.5281/zenodo.3667670)) | [license](https://zenodo.org/record/3667670/files/LICENSE?download=1) |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Pi_Derby_Ensembl_Plant_32.bridge","description": "BridgeDb identifier mapping file for Populus trichocarpa for genes and proteins","identifier": "10.5281/zenodo.5638771/Pi_Derby_Ensembl_Plant_32.bridge","license": "https://zenodo.org/record/5638771/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Populus trichocarpa, gene, protein","url": "https://doi.org/10.5281/zenodo.5638771","distribution": [ { "@type": "DataDownload", "name": "Pi_Derby_Ensembl_Plant_32.bridge", "contentURL": "https://zenodo.org/record/5638771/files/Pi_Derby_Ensembl_Plant_32.bridge?download=1" } ],"isAccessibleForFree": true}</script> Populus trichocarpa | [Pi_Derby_Ensembl_Plant_32.bridge](https://zenodo.org/record/5638771/files/Pi_Derby_Ensembl_Plant_32.bridge?download=1) | 212.5 MB| (doi:[10.5281/zenodo.5638771](https://doi.org/10.5281/zenodo.5638771)) | [license](https://zenodo.org/record/5638771/files/LICENSE?download=1) |
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| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Qc_Derby_Ensembl_85.bridge","description": "BridgeDb identifier mapping file for Equus caballus for genes and proteins","identifier": "10.5281/zenodo.5638771/Qc_Derby_Ensembl_85.bridge","license": "https://zenodo.org/record/5638771/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Equus caballus, gene, protein","url": "https://doi.org/10.5281/zenodo.5638771","distribution": [ { "@type": "DataDownload", "name": "Qc_Derby_Ensembl_85.bridge", "contentURL": "https://zenodo.org/record/5638771/files/Qc_Derby_Ensembl_85.bridge?download=1" } ],"isAccessibleForFree": true}</script> Equus caballus | [Qc_Derby_Ensembl_85.bridge](https://zenodo.org/record/5638771/files/Qc_Derby_Ensembl_85.bridge?download=1) | 102.3 MB| (doi:[10.5281/zenodo.5638771](https://doi.org/10.5281/zenodo.5638771)) | [license](https://zenodo.org/record/5638771/files/LICENSE?download=1) |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Rn_Derby_Ensembl_91.bridge","description": "BridgeDb identifier mapping file for Rattus norvegicus for genes and proteins","identifier": "10.5281/zenodo.3667670/Rn_Derby_Ensembl_91.bridge","license": "https://zenodo.org/record/3667670/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Rattus norvegicus, gene, protein","url": "https://doi.org/10.5281/zenodo.3667670","distribution": [ { "@type": "DataDownload", "name": "Rn_Derby_Ensembl_91.bridge", "contentURL": "https://zenodo.org/record/3667670/files/Rn_Derby_Ensembl_91.bridge?download=1" } ],"isAccessibleForFree": true}</script> Rattus norvegicus | [Rn_Derby_Ensembl_91.bridge](https://zenodo.org/record/3667670/files/Rn_Derby_Ensembl_91.bridge?download=1) | | (doi:[10.5281/zenodo.3667670](https://doi.org/10.5281/zenodo.3667670)) | [license](https://zenodo.org/record/3667670/files/LICENSE?download=1) |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Sc_Derby_Ensembl_91.bridge","description": "BridgeDb identifier mapping file for Saccharomyces cerevisiae for genes and proteins","identifier": "10.5281/zenodo.3667670/Sc_Derby_Ensembl_91.bridge","license": "https://zenodo.org/record/3667670/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Saccharomyces cerevisiae, gene, protein","url": "https://doi.org/10.5281/zenodo.3667670","distribution": [ { "@type": "DataDownload", "name": "Sc_Derby_Ensembl_91.bridge", "contentURL": "https://zenodo.org/record/3667670/files/Sc_Derby_Ensembl_91.bridge?download=1" } ],"isAccessibleForFree": true}</script> Saccharomyces cerevisiae | [Sc_Derby_Ensembl_91.bridge](https://zenodo.org/record/3667670/files/Sc_Derby_Ensembl_91.bridge?download=1) | | (doi:[10.5281/zenodo.3667670](https://doi.org/10.5281/zenodo.3667670)) | [license](https://zenodo.org/record/3667670/files/LICENSE?download=1) |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Sl_Derby_Ensembl_Plant_32.bridge","description": "BridgeDb identifier mapping file for Solanum lycopersicum for genes and proteins","identifier": "10.5281/zenodo.5638771/Sl_Derby_Ensembl_Plant_32.bridge","license": "https://zenodo.org/record/5638771/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Solanum lycopersicum, gene, protein","url": "https://doi.org/10.5281/zenodo.5638771","distribution": [ { "@type": "DataDownload", "name": "Sl_Derby_Ensembl_Plant_32.bridge", "contentURL": "https://zenodo.org/record/5638771/files/Sl_Derby_Ensembl_Plant_32.bridge?download=1" } ],"isAccessibleForFree": true}</script> Solanum lycopersicum | [Sl_Derby_Ensembl_Plant_32.bridge](https://zenodo.org/record/5638771/files/Sl_Derby_Ensembl_Plant_32.bridge?download=1) | 59.0 MB| (doi:[10.5281/zenodo.5638771](https://doi.org/10.5281/zenodo.5638771)) | [license](https://zenodo.org/record/5638771/files/LICENSE?download=1) |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Ss_Derby_Ensembl_85.bridge","description": "BridgeDb identifier mapping file for Sus scrofa for genes and proteins","identifier": "10.5281/zenodo.5638771/Ss_Derby_Ensembl_85.bridge","license": "https://zenodo.org/record/5638771/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Sus scrofa, gene, protein","url": "https://doi.org/10.5281/zenodo.5638771","distribution": [ { "@type": "DataDownload", "name": "Ss_Derby_Ensembl_85.bridge", "contentURL": "https://zenodo.org/record/5638771/files/Ss_Derby_Ensembl_85.bridge?download=1" } ],"isAccessibleForFree": true}</script> Sus scrofa | [Ss_Derby_Ensembl_85.bridge](https://zenodo.org/record/5638771/files/Ss_Derby_Ensembl_85.bridge?download=1) | 117.7 MB| (doi:[10.5281/zenodo.5638771](https://doi.org/10.5281/zenodo.5638771)) | [license](https://zenodo.org/record/5638771/files/LICENSE?download=1) |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Vv_Derby_Ensembl_Plant_32.bridge","description": "BridgeDb identifier mapping file for Vitis vinifera for genes and proteins","identifier": "10.5281/zenodo.5638771/Vv_Derby_Ensembl_Plant_32.bridge","license": "https://zenodo.org/record/5638771/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Vitis vinifera, gene, protein","url": "https://doi.org/10.5281/zenodo.5638771","distribution": [ { "@type": "DataDownload", "name": "Vv_Derby_Ensembl_Plant_32.bridge", "contentURL": "https://zenodo.org/record/5638771/files/Vv_Derby_Ensembl_Plant_32.bridge?download=1" } ],"isAccessibleForFree": true}</script> Vitis vinifera | [Vv_Derby_Ensembl_Plant_32.bridge](https://zenodo.org/record/5638771/files/Vv_Derby_Ensembl_Plant_32.bridge?download=1) | 109.7 MB| (doi:[10.5281/zenodo.5638771](https://doi.org/10.5281/zenodo.5638771)) | [license](https://zenodo.org/record/5638771/files/LICENSE?download=1) |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Xt_Derby_Ensembl_85.bridge","description": "BridgeDb identifier mapping file for Xenopus tropicalis for genes and proteins","identifier": "10.5281/zenodo.5638771/Xt_Derby_Ensembl_85.bridge","license": "https://zenodo.org/record/5638771/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Xenopus tropicalis, gene, protein","url": "https://doi.org/10.5281/zenodo.5638771","distribution": [ { "@type": "DataDownload", "name": "Xt_Derby_Ensembl_85.bridge", "contentURL": "https://zenodo.org/record/5638771/files/Xt_Derby_Ensembl_85.bridge?download=1" } ],"isAccessibleForFree": true}</script> Xenopus tropicalis | [Xt_Derby_Ensembl_85.bridge](https://zenodo.org/record/5638771/files/Xt_Derby_Ensembl_85.bridge?download=1) | 79.1 MB| (doi:[10.5281/zenodo.5638771](https://doi.org/10.5281/zenodo.5638771)) | [license](https://zenodo.org/record/5638771/files/LICENSE?download=1) |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Zm_Derby_Ensembl_Plant_39.bridge","description": "BridgeDb identifier mapping file for Zea mays for genes and proteins","identifier": "10.5281/zenodo.3667670/Zm_Derby_Ensembl_Plant_39.bridge","license": "https://zenodo.org/record/3667670/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Zea mays, gene, protein","url": "https://doi.org/10.5281/zenodo.3667670","distribution": [ { "@type": "DataDownload", "name": "Zm_Derby_Ensembl_Plant_39.bridge", "contentURL": "https://zenodo.org/record/3667670/files/Zm_Derby_Ensembl_Plant_39.bridge?download=1" } ],"isAccessibleForFree": true}</script> Zea mays | [Zm_Derby_Ensembl_Plant_39.bridge](https://zenodo.org/record/3667670/files/Zm_Derby_Ensembl_Plant_39.bridge?download=1) | | (doi:[10.5281/zenodo.3667670](https://doi.org/10.5281/zenodo.3667670)) | [license](https://zenodo.org/record/3667670/files/LICENSE?download=1) |

## Coronavirus gene/protein identifiers
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