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Typo fix
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egonw committed Dec 6, 2021
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6 changes: 3 additions & 3 deletions gene_database/readme.md
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# Gene / Protein ID mapping databases
<a name="genes" />

| Species | BridgeDb Download | Size | DOI | License | Data |
| Species | BridgeDb Download | Size | DOI | License | Date |
|-------|--------|---------|
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "Ag_Derby_Ensembl_Metazoa_39.bridge","description": "BridgeDb identifier mapping file for Anopheles gambiae for genes and proteins","identifier": "10.5281/zenodo.3667670/Ag_Derby_Ensembl_Metazoa_39.bridge","license": "https://zenodo.org/record/3667670/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Anopheles gambiae, gene, protein","url": "https://doi.org/10.5281/zenodo.3667670","distribution": [ { "@type": "DataDownload", "name": "Ag_Derby_Ensembl_Metazoa_39.bridge", "contentURL": "https://zenodo.org/record/3667670/files/Ag_Derby_Ensembl_Metazoa_39.bridge?download=1" } ],"isAccessibleForFree": true}</script> Anopheles gambiae | [Ag_Derby_Ensembl_Metazoa_39.bridge](https://zenodo.org/record/3667670/files/Ag_Derby_Ensembl_Metazoa_39.bridge?download=1) | | (doi:[10.5281/zenodo.3667670](https://doi.org/10.5281/zenodo.3667670)) | [license](https://zenodo.org/record/3667670/files/LICENSE?download=1) | |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "An_Derby_Ensembl_Fungi_32.bridge","description": "BridgeDb identifier mapping file for Aspergillus niger for genes and proteins","identifier": "10.5281/zenodo.5638771/An_Derby_Ensembl_Fungi_32.bridge","license": "https://zenodo.org/record/5638771/files/LICENSE?download=1","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Aspergillus niger, gene, protein","url": "https://doi.org/10.5281/zenodo.5638771","distribution": [ { "@type": "DataDownload", "name": "An_Derby_Ensembl_Fungi_32.bridge", "contentURL": "https://zenodo.org/record/5638771/files/An_Derby_Ensembl_Fungi_32.bridge?download=1" } ],"isAccessibleForFree": true}</script> Aspergillus niger | [An_Derby_Ensembl_Fungi_32.bridge](https://zenodo.org/record/5638771/files/An_Derby_Ensembl_Fungi_32.bridge?download=1) | 25.3 MB| (doi:[10.5281/zenodo.5638771](https://doi.org/10.5281/zenodo.5638771)) | [license](https://zenodo.org/record/5638771/files/LICENSE?download=1) | |
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## Coronavirus gene/protein identifiers
<a name="corona" />

| Species | BridgeDb Download | Size | DOI | License | Data |
| Species | BridgeDb Download | Size | DOI | License | Date |
|-------|--------|---------|
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "humancorona-2021-11-27.bridge","description": "BridgeDb identifier mapping file for Human Coronaviruses for genes and proteins","identifier": "10.5281/zenodo.5734440/humancorona-2021-11-27.bridge","license": "http://creativecommons.org/publicdomain/zero/1.0/","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, Human Coronaviruses, gene, protein","url": "https://doi.org/10.5281/zenodo.5734440","distribution": [ { "@type": "DataDownload", "name": "humancorona-2021-11-27.bridge", "contentURL": "https://zenodo.org/record/5734440/files/humancorona-2021-11-27.bridge?download=1" } ],"isAccessibleForFree": true}</script> Human Coronaviruses | [humancorona-2021-11-27.bridge](https://zenodo.org/record/5734440/files/humancorona-2021-11-27.bridge?download=1) | 2.1 MB| (doi:[10.5281/zenodo.5734440](https://doi.org/10.5281/zenodo.5734440)) | [CC0](http://creativecommons.org/publicdomain/zero/1.0/) | 2021-11-27 |

# Other ID mapping databases
<a name="other" />

| type | BridgeDb Download | Size | DOI | License | Data |
| type | BridgeDb Download | Size | DOI | License | Date |
|-------|--------|---------|
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "complexes_20200510.bridge","description": "BridgeDb identifier mapping file for Complexes (species independent)","identifier": "10.6084/m9.figshare.12278810.v1/complexes_20200510.bridge","license": "http://creativecommons.org/publicdomain/zero/1.0/","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, type","url": "https://doi.org/10.6084/m9.figshare.12278810.v1","distribution": [ { "@type": "DataDownload", "name": "complexes_20200510.bridge", "contentURL": "https://ndownloader.figshare.com/files/22624346" } ],"isAccessibleForFree": true}</script> Complexes | [complexes_20200510.bridge](https://ndownloader.figshare.com/files/22624346) | 8.28 MB| (doi:[10.6084/m9.figshare.12278810.v1](https://doi.org/10.6084/m9.figshare.12278810.v1)) | [CC0](http://creativecommons.org/publicdomain/zero/1.0/) | |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/0.4-DRAFT/" },"name": "interactions20210109.bridge","description": "BridgeDb identifier mapping file for Interactions (species independent)","identifier": "10.6084/m9.figshare.135511761/interactions20210109.bridge","license": "http://creativecommons.org/publicdomain/zero/1.0/","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, type","url": "https://doi.org/10.6084/m9.figshare.135511761","distribution": [ { "@type": "DataDownload", "name": "interactions20210109.bridge", "contentURL": "https://ndownloader.figshare.com/files/26003138" } ],"isAccessibleForFree": true}</script> Interactions | [interactions20210109.bridge](https://ndownloader.figshare.com/files/26003138) | 17.13 MB| (doi:[10.6084/m9.figshare.135511761](https://doi.org/10.6084/m9.figshare.135511761)) | [CC0](http://creativecommons.org/publicdomain/zero/1.0/) | |
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2 changes: 1 addition & 1 deletion update.groovy
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Expand Up @@ -36,7 +36,7 @@ lines.each { String line ->
def jsonSlurper = new JsonSlurper()
fileContents = new File(input).text
def data = jsonSlurper.parseText(fileContents)
println "| ${data.type} | BridgeDb Download | Size | DOI | License | Data |"
println "| ${data.type} | BridgeDb Download | Size | DOI | License | Date |"
println "|-------|--------|---------|"
for (file in data.mappingFiles) {
print "| "
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