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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 494 112

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 16 11

  3. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 20 2

  4. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 11

  5. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 10 1

Repositories

Showing 10 of 58 repositories
  • webRTC-connect Public
    talmolab/webRTC-connect’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Jul 20, 2025
  • sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    talmolab/sleap-io’s past year of commit activity
    Python 16 BSD-3-Clause 11 15 3 Updated Jul 19, 2025
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    talmolab/sleap-nn’s past year of commit activity
    Python 9 GPL-3.0 2 15 7 Updated Jul 19, 2025
  • lablink Public
    talmolab/lablink’s past year of commit activity
    Python 0 BSD-2-Clause 0 36 4 Updated Jul 17, 2025
  • sleap Public

    A deep learning framework for multi-animal pose tracking.

    talmolab/sleap’s past year of commit activity
    Python 494 112 74 (4 issues need help) 32 Updated Jul 17, 2025
  • sleap-mot Public

    Standalone multi-object tracking.

    talmolab/sleap-mot’s past year of commit activity
    Python 1 BSD-3-Clause 0 7 2 Updated Jul 17, 2025
  • dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    talmolab/dreem’s past year of commit activity
    Python 10 BSD-3-Clause 1 14 10 Updated Jul 16, 2025
  • sleap-cuda-container Public

    Dockerfiles and test data for a portable SLEAP container with GPU acceleration and various connections.

    talmolab/sleap-cuda-container’s past year of commit activity
    Python 0 BSD-2-Clause 2 2 3 Updated Jul 3, 2025
  • sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    talmolab/sleap-roots’s past year of commit activity
    Python 11 BSD-3-Clause 0 15 0 Updated Jun 23, 2025
  • stac-mjx Public

    Implementation of STAC using MJX for GPU acceleration. Part of VNL project.

    talmolab/stac-mjx’s past year of commit activity
    Jupyter Notebook 13 BSD-3-Clause 2 34 0 Updated Jun 20, 2025
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