fix athena configuration bug

Stone/Makeoptions.in

@@ -0,0 +1,109 @@
+# -*- mode: makefile -*-
+#
+#    @WARNING1@
+#    @WARNING2@
+#===============================================================================
+# FILE: Makeoptions.in
+#
+# PURPOSE: Template for src/Makeoptions.  When 'configure' is run, a new
+# Makeoptions will be created (overwriting the last) from this template.
+#
+# TO BY-PASS CONFIGURE: copy this file into Makeoptions, and edit by hand to
+#   set the appropriate object files, compiler options, and library paths.
+#
+#-------------------  macro definitions  ---------------------------------------
+
+MACHINE = default
+#MACHINE = kraken
+
+#-------------------  default definitions  -------------------------------------
+
+CC  = @CC@
+LDR = @CC@
+OPT = @COMPILER_OPTS@
+CUSTLIBS =
+MPIINC =
+MPILIB =
+FFTWLIB =
+FFTWINC =
+BLOCKINC = 
+BLOCKLIB = 
+CUSTLIBS = -ldl -lm
+
+ifeq (@FFT_MODE@,FFT_ENABLED)
+	BLOCKINC = -I fftsrc
+	FFTWLIB = -L/usr/lib -lfftw3
+	FFTWINC = -I/usr/include
+endif
+
+ifeq (@MPI_MODE@,MPI_PARALLEL)
+	CC = mpicc 
+	LDR = mpicc 
+endif
+
+#-------------------  compiler/library definitions  ----------------------------
+# select using MACHINE=<name> in command line.  For example
+#    ophir> make all MACHINE=ophir
+# New machines can be added to ifeq blocks below.
+
+ifeq ($(MACHINE),kraken)
+	CC = cc
+	LDR = cc
+	OPT = -O3
+else ifeq ($(MACHINE),ophir)
+	CC = /usr/peyton/intel/10.0/cce/bin/icc
+	LDR = /usr/peyton/intel/10.0/cce/bin/icc
+	OPT = -O3 -xW -ipo -i-static
+	FFTWLIB = -L/scr1/lemaster/fftw-3.1.2/lib -lfftw3
+	FFTWINC = -I/scr1/lemaster/fftw-3.1.2/include
+else ifeq ($(MACHINE),peyton-mpi)
+	CC  = /usr/peyton/openmpi/bin/mpicc
+	LDR = /usr/peyton/openmpi/bin/mpicc
+	OPT = -O3 -g
+	MPIINC = -I/usr/peyton/openmpi/include
+	MPILIB = -L/usr/peyton/openmpi/lib -lmpi
+	FFTWLIB = -L/scr0/lemaster/fftw-3.1.2/lib -lfftw3
+	FFTWINC = -I/scr0/lemaster/fftw-3.1.2/include
+else ifeq ($(MACHINE),artemis)
+	CC  = mpicc
+	LDR = mpicc
+	OPT = -O3 -xW -ipo -i-static
+	MPIINC =
+	MPILIB = -lmpi
+	FFTWLIB = -L/opt/fftw3/lib64 -lfftw3
+	FFTWINC = -I/opt/fftw3/include
+else ifeq ($(MACHINE),aether)
+	CC  = mpicc
+	LDR = mpicc
+	OPT = -O3
+	MPIINC = -I~/lam-7.1.4/include
+	MPILIB = -L~/lam-7.1.4/lib
+else ifeq ($(MACHINE),zenith)
+	CC  = mpicc
+	LDR = mpicc
+	OPT = -O3
+	MPIINC = -I/opt/mpich2/intel/include
+	MPILIB = -L/opt/mpich2/intel/lib -lmpich
+	FFTWLIB = -L/usr/local/fftw3 -lfftw3
+	FFTWINC = -I/usr/local/fftw3
+else ifeq ($(MACHINE),macosx)
+	CC = gcc
+	LDR = gcc
+	OPT = -O3 
+	FFTWLIB = -L/opt/local/lib -lfftw3
+	FTWINC = -I/opt/local/include
+#else
+#	abort Unsupported MACHINE=$(MACHINE)
+endif
+
+ifeq (@MPI_MODE@,NO_MPI_PARALLEL)
+	MPIINC = 
+	MPILIB = 
+endif
+ifeq (@FFT_MODE@,NO_FFT)
+	FFTWINC = 
+	FFTWLIB = 
+endif
+
+CFLAGS = $(OPT) $(BLOCKINC) $(MPIINC) $(FFTWINC)
+LIB = $(BLOCKLIB) $(MPILIB) $(FFTWLIB) $(CUSTLIBS)

Stone/README

@@ -0,0 +1 @@
+The Makeoptions.in file in athena4.2 can be a bit buggy, this version should fix that