v0.3.5-alpha

Merge pull request #41 from theGreatHerrLebert/feature/sage-tdc

updated lockfile, build should now succeed

v0.3.4-alpha

Version bump

v0.3.3-alpha

Merge pull request #38 from theGreatHerrLebert/feature/sage-tdc

version bump

v0.3.2-alpha

Merge pull request #37 from theGreatHerrLebert/feature/sage-tdc

bumping version

v0.3.1-alpha

Merge pull request #36 from theGreatHerrLebert/feature/sage-tdc

adding updated dependencies

sagepy 0.3.0

sagepy 0.3.0 is here!

New Features:

• Added Feature struct as a sub-return of the PSM scoring function.
• Introduced native SAGE q-value calculation functions for PSM, peptide, and protein levels.
• Simplified the interface for re-scoring with a custom scikit-learn-like re-scoring engine.

Bug Fixes:

• Decoy peptide sequences are now correctly returned as inverted/shuffled sequences.
• Fixed the calculation of spectral Pearson correlation.

Breaking Changes:

• Reintroduced the Feature struct from SAGE to the PSM return of sagepy.
• The updated PSM struct is incompatible with version 0.2.x. Serialized PSMs from older versions can no longer be loaded.

Wildcard passing of variable mods now working

This release fixes an issue where wildcard start and end modifications where not recognized by SAGE core correctly

v0.2.26-alpha: Merge pull request #30 from theGreatHerrLebert/features/re-scoring

Features/re scoring

v0.2.25-alpha: Merge pull request #29 from theGreatHerrLebert/features/re-scoring

Features/re scoring

Intensity features

Merge pull request #28 from theGreatHerrLebert/version/0.23-alpha

bumping version