merge pr #81: v0.2.0

tidymodels · Apr 21, 2021 · c8aed62 · c8aed62
2 parents d1279c9 + 4fe1c1c
commit c8aed62
Show file tree

Hide file tree

Showing 66 changed files with 1,403 additions and 1,243 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: stacks
 Title: Tidy Model Stacking
-Version: 0.1.0.9000
+Version: 0.2.0
 Authors@R: c(
     person(given = "Simon",
            family = "Couch",

diff --git a/NEWS.md b/NEWS.md
@@ -1,8 +1,6 @@
 # stacks
 
-### v0.1.0.9000
-
-Developmental version, to be released as v0.2.0.
+### v0.2.0
 
 ### Breaking changes
 

diff --git a/R/example_data.R b/R/example_data.R
@@ -46,8 +46,7 @@
 #' 
 #' @source 
 #' Julie Jung et al. (2020) Multimodal mechanosensing enables treefrog 
-#' embryos to escape egg-predators.
-#' \url{https://doi.org/10.1242/jeb.236141}
+#' embryos to escape egg-predators. \doi{10.1242/jeb.236141}
 #'
 #' @name example_data
 NULL

diff --git a/R/tree_frogs.R b/R/tree_frogs.R
@@ -46,6 +46,5 @@
 #' @source 
 #' 
 #' Julie Jung et al. (2020) Multimodal mechanosensing enables treefrog 
-#' embryos to escape egg-predators.
-#' \url{https://doi.org/10.1242/jeb.236141}
+#' embryos to escape egg-predators. \doi{10.1242/jeb.236141}
 "tree_frogs"
diff --git a/README.Rmd b/README.Rmd
@@ -43,7 +43,7 @@ stacks is generalized with respect to:
 * Cross-validation scheme: Any resampling algorithm implemented in [rsample](https://rsample.tidymodels.org/) or adjacent packages is fair game for resampling data for use in training a model stack.
 * Error metric: Any metric function implemented in [yardstick](https://yardstick.tidymodels.org/) or adjacent packages is fair game for evaluating model stacks and their members. That package provides some infrastructure for creating your own metric functions as well!
 
-stacks uses a regularized linear model to combine predictions from ensemble members, though this model type is only one of many possible learning algorithms that could be used to fit a stacked ensemble model. For implementations of additional ensemble learning algorithms, check out [h2o](http://docs.h2o.ai/h2o/latest-stable/h2o-r/docs/reference/h2o.stackedEnsemble.html) and [SuperLearner](https://cran.r-project.org/web/packages/SuperLearner/SuperLearner.pdf).
+stacks uses a regularized linear model to combine predictions from ensemble members, though this model type is only one of many possible learning algorithms that could be used to fit a stacked ensemble model. For implementations of additional ensemble learning algorithms, check out [h2o](http://docs.h2o.ai/h2o/latest-stable/h2o-r/docs/reference/h2o.stackedEnsemble.html) and [SuperLearner](https://CRAN.R-project.org/package=SuperLearner).
 
 Rather than diving right into the implementation, we'll focus here on how the pieces fit together, conceptually, in building an ensemble with `stacks`. See the `basics` vignette for an example of the API in action!
 

diff --git a/README.md b/README.md
@@ -71,7 +71,7 @@ For implementations of additional ensemble learning algorithms, check
 out
 [h2o](http://docs.h2o.ai/h2o/latest-stable/h2o-r/docs/reference/h2o.stackedEnsemble.html)
 and
-[SuperLearner](https://cran.r-project.org/web/packages/SuperLearner/SuperLearner.pdf).
+[SuperLearner](https://CRAN.R-project.org/package=SuperLearner).
 
 Rather than diving right into the implementation, we’ll focus here on
 how the pieces fit together, conceptually, in building an ensemble with

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,27 +1,16 @@
-# stacks 0.1.0
-
-This submission is a resubmission following a request to adjust a URL with
-200 status.
+# stacks 0.2.0
 
 ## Test environments
 
-* local macOS install, R 3.6.3
+* local macOS install, R 4.0.3
 * macOS (on github actions), release 
 * ubuntu 16.04 (on github actions), release, devel
 * windows (on github actions), R 3.6.3, release
 * windows (on win-builder), devel
 
 ## R CMD check results
 
-There were 0 ERRORs, 0 WARNINGs, and 0 NOTEs on all systems except 
-the following NOTE on win-builder:
-
-```
-* checking CRAN incoming feasibility ... NOTE
-Maintainer: 'Simon Couch <[email protected]>'
-
-New submission
-```
+There were no ERRORs, WARNINGs, or  NOTEs.
 
 ## Reverse dependencies
 

diff --git a/data/class_res_nn.rda b/data/class_res_nn.rda
diff --git a/data/class_res_rf.rda b/data/class_res_rf.rda
diff --git a/data/log_res_nn.rda b/data/log_res_nn.rda
diff --git a/data/log_res_rf.rda b/data/log_res_rf.rda
diff --git a/data/reg_folds.rda b/data/reg_folds.rda
diff --git a/data/reg_res_lr.rda b/data/reg_res_lr.rda
diff --git a/data/reg_res_sp.rda b/data/reg_res_sp.rda
diff --git a/data/reg_res_svm.rda b/data/reg_res_svm.rda
diff --git a/data/tree_frogs_reg_test.rda b/data/tree_frogs_reg_test.rda
diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html