rbrain

MRI analysis tools for rodent brains. Pre-alpha/development version: NOT FOR GENERAL USE. Contact Tim Rosenow ([email protected]).

Currently only a basic UNET brain segmenter is implemented.

Requirements

Linux (or a Linux container) - tested on Fedora 35+ and the Tensorflow docker container.
Python 3 + pip (tested on 3.8 and 3.10)
For rbrain segmenter: Tensorflow installed and setup (the Tensorflow docker image works).

This is currently installed as a wheel package, although in future I will change this to a more self-contained option.

./build.sh
pip install rbrain-core/dist/*.whl
pip install rbrain-segmenter/dist/*.whl

Name		Name	Last commit message	Last commit date
Latest commit History 27 Commits
bin		bin
rbrain-core		rbrain-core
rbrain-segmenter		rbrain-segmenter
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
build.sh		build.sh