Benchmarking Large Language Models for Bio-Image Analysis Code Generation

Effortless AI-assisted data labeling with AI support from YOLO, Segment Anything (SAM+SAM2), MobileSAM!!

Script to convert a TIFF to OME-Zarr while simultaneously converting the pixel type

ImgLib2-based viewer for registered SPIM stacks and more

Basic example of using OME-Zarr in a Nextflow pipeline

A "batteries-included" distribution of ImageJ 🔋

Conversion between spatial transformations of various formats / parametrizations

The Java library to run Deep Learning models

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Regions of interest (ROIs) and labelings for ImgLib2

A generic next-generation Java library for image processing