Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
tmbuza authored Mar 25, 2024
1 parent d01fc5b commit 9d58fd0
Showing 1 changed file with 12 additions and 11 deletions.
23 changes: 12 additions & 11 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,21 +1,22 @@
# iMAP: Integrated Microbiome Analysis Pipeline


NOTE: The new iMAP repo is under reconstruction to make it more reproducible. For more details please refer to the `Related Work` section below.
NOTE: The new iMAP repo is being rebuilt to make it more reproducible. For more details, please refer to the `Related Work` section below.

## Related work

| Repository | Description | Documentation Link |
|------------|-------------|---------------------|
| [PART 01](https://github.com/tmbuza/imap-essential-software/) | Software requirement for microbiome data analysis with Snakemake workflows | [Documentation](https://tmbuza.github.io/imap-essential-software/) |
| [PART 02](https://github.com/tmbuza/imap-sample-metadata/) | Downloading and exploring microbiome sample metadata from SRA Database | [Documentation](https://tmbuza.github.io/imap-sample-metadata/) |
| [PART 03](https://github.com/tmbuza/imap-download-sra-reads/) | Downloading and filtering microbiome sequencing data from SRA database | [Documentation](https://tmbuza.github.io/imap-download-sra-reads/) |
| [PART 04](https://github.com/tmbuza/imap-read-quality-control/) | Quality Control of Microbiome Next Generation Sequencing Reads | [Documentation](https://tmbuza.github.io/imap-read-quality-control/) |
| [PART 05](https://github.com/tmbuza/imap-bioinformatics-mothur/) | Microbial profiling using MOTHUR and Snakemake workflows | [Documentation](https://tmbuza.github.io/imap-mothur-bioinformatics/) |
| [PART 06](https://github.com/tmbuza/imap-bioinformatics-qiime2/) | Microbial profiling using QIIME2 and Snakemake workflows | [Documentation](https://tmbuza.github.io/imap-qiime2-bioinformatics/) |
| [PART 07](https://github.com/tmbuza/imap-data-processing/) | Processing Output from 16S-Based microbiome bioinformatics pipelines | [Documentation](https://tmbuza.github.io/imap-data-preparation/) |
| [PART 08](https://github.com/tmbuza/imap-exploratory-analysis/) | Exploratory Analysis of 16S-Based Microbiome Processed Data | [Documentation](https://tmbuza.github.io/imap-data-exploration/) |


| Repo | Description | Status |
|:-----------------------|----------------------------------|--------------:|
| [IMAP-PART 01](https://github.com/tmbuza/imap-software-requirements/) | Installing software to get started with microbiome data analysis with Snakemake workflows | [In-progress](https://tmbuza.github.io/imap-software-requirements/) |
| [IMAP-PART 02](https://github.com/tmbuza/imap-sample-metadata/) | Downloading and exploring microbiome sample metadata from SRA Database | [In-progress](https://tmbuza.github.io/imap-sample-metadata/) |
| [IMAP-PART 03](https://github.com/tmbuza/imap-download-sra-reads/) | Downloading and filtering microbiome sequencing data from SRA database | [In-progress](https://tmbuza.github.io/imap-download-sra-reads/) |
| [IMAP-PART 04](https://github.com/tmbuza/imap-read-quality-control/) | Quality Control of Microbiome Next Generation Sequencing Reads | [In-progress](https://tmbuza.github.io/imap-read-quality-control/) |
| [IMAP-PART 05](https://github.com/tmbuza/imap-bioinformatics-analysis/) | Bioinformatics & classification of preprocessed microbiome sequencing data | [In-progress](https://tmbuza.github.io/imap-bioinformatics-analysis/) |
| [IMAP-PART 06](https://github.com/tmbuza//) | | [In-progress](https://tmbuza.github.io//) |
| [IMAP-PART 07](https://github.com/tmbuza//) | | [In-progress](https://tmbuza.github.io//) |
| [IMAP-PART 08](https://github.com/tmbuza//) | | [In-progress](https://tmbuza.github.io//) |

<br>

Expand Down

0 comments on commit 9d58fd0

Please sign in to comment.