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(DO NOT MERGE) - Tpetra: performance improvements to CrsMatrix::copyAndPermute - working branch #13598

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(DO NOT MERGE) - Tpetra: performance improvements to CrsMatrix::copyAndPermute - working branch #13598

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@skennon10 skennon10 commented Nov 13, 2024 •
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Motivation

Clients have reported copyAndPermute as a large portion of the time spent in e.g. evaluating and scattering the Jacobian in the panzer application. This PR addresses that by profiling and rewriting code, and using kokkos parallel for/reduce.

This is a work-in-progress PR solely for interacting with colleagues.

Status

Serial speedups have been obtained by writing a batch/array version of getGlobalElement (which amortizes the 'if(contiguous)' and other if-stmts), rewriting replaceGlobalValuesImpl and getGlobalRowCopy. Timing results to follow in an update to this issue.

This bottom-up approach led to a top-down investigation, leading to using Kokkos to parallelize the copyAndPermute main loop over rows of the source matrix.

Related Issues

#13587

  • Closes 13587

Stakeholder Feedback

Testing

tjfulle and others added 3 commits September 20, 2024 11:17
@tjfulle
treat copy and permute for the special case that both the source and …
35785c2 
…target matrices are locally indexed
@skennon10
draft: testing access to device pointers for column indices and values
b7ce02c
@skennon10
Address performance issues in CrsMatrix copyAndPermute:
53ae2cc 
  1) timers 2) batch version of Map::getGlobalElement 3) improved replaceGlobalValues
  4) kokkos parallel reduce/for for the main loop over rows in CAP
  5) small improvements using if constexpr()
@skennon10 skennon10 self-assigned this Nov 13, 2024
@skennon10 skennon10 requested review from a team as code owners November 13, 2024 18:48
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Using Repos:

Repo: TRILINOS (trilinos/Trilinos)
  • Branch: srkenno/copy-and-permute-improvements
  • SHA: 53ae2cc
  • Mode: TEST_REPO

Pull Request Author: skennon10

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CDash Test Results for PR# 13598.


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@skennon10 skennon10 marked this pull request as draft November 14, 2024 16:07
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Using Repos:

Repo: TRILINOS (trilinos/Trilinos)
  • Branch: srkenno/copy-and-permute-improvements
  • SHA: 7c7a518
  • Mode: TEST_REPO

Pull Request Author: skennon10

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Build Information

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TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA b3df351


CDash Test Results for PR# 13598.


Wiki: How to Reproduce PR Testing Builds and Errors.

@skennon10 skennon10 changed the title Draft - Tpetra: performance improvements to CrsMatrix::copyAndPermute (DO NOT MERGE) - Tpetra: performance improvements to CrsMatrix::copyAndPermute - working branch Nov 14, 2024
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Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

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Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: PR_gcc-openmpi-openmp

  • Build Num: 774
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Using Repos:

Repo: TRILINOS (trilinos/Trilinos)
  • Branch: srkenno/copy-and-permute-improvements
  • SHA: cbce5bb
  • Mode: TEST_REPO

Pull Request Author: skennon10

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Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

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TRILINOS_TARGET_SHA 0dd826f


CDash Test Results for PR# 13598.


Wiki: How to Reproduce PR Testing Builds and Errors.

jhux2 added a commit that referenced this pull request Nov 15, 2024
@jhux2
Revert "Merge Pull Request #13491 from NyquilDreams/Trilinos/transfer…
f5996ca 
…AndFillCompleteRefactor"

Until we can diagnose segfaults reported wrt PR #13598.

This reverts commit 7eb5fe5, reversing
changes made to e20e3cd.
@jhux2 jhux2 mentioned this pull request Nov 15, 2024
Merged
jhux2 added a commit that referenced this pull request Nov 20, 2024
@jhux2
Tpetra: revert #13491
4b7b350 
Until we can diagnose segfaults reported wrt PR #13598.

Signed-off-by: Jonathan Hu <[email protected]>
@csiefer2 csiefer2 added the AT: PRE-TEST INSPECTED Required to test outside contributions. This label alone will not allow a PR to merge. label Dec 3, 2024
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