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jltsiren committed Jan 18, 2021
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2 changes: 1 addition & 1 deletion benchmark/README.md
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Expand Up @@ -53,7 +53,7 @@ Accepted for publication in Software, Practice and Experience.
Simon Gog ([email protected])

[sdsl]: https://github.com/simongog/sdsl "sdsl"
[pz]: http://pizzachili.di.unipi.it "Pizza&Chili"
[pz]: http://pizzachili.dcc.uchile.cl/ "Pizza&Chili"
[PP]: http://people.eng.unimelb.edu.au/sgog/optimized.pdf "Preprint"
[CURL]: http://curl.haxx.se/ "cURL"
[GZIP]: http://www.gnu.org/software/gzip/ "Gzip Compressor"
2 changes: 1 addition & 1 deletion benchmark/indexing_count/README.md
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Expand Up @@ -76,7 +76,7 @@ and test cases from the [Pizza&Chili][pz] website.
Specify which indexes should be listed in the report.

[sdsl]: https://github.com/simongog/sdsl "sdsl"
[pz]: http://pizzachili.di.unipi.it "Pizza&Chili"
[pz]: http://pizzachili.dcc.uchile.cl/ "Pizza&Chili"
[RPJ]: http://www.r-project.org/ "R"
[LT]: http://www.tug.org/applications/pdftex/ "pdflatex"
[RES]: https://github.com/simongog/simongog.github.com/raw/master/assets/images/count.pdf "count.pdf"
10 changes: 5 additions & 5 deletions benchmark/indexing_count/test_case.config
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Expand Up @@ -3,11 +3,11 @@
# (2) Path to the test file
# (3) LaTeX name
# (4) Download link (if the test is available online)
ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.di.unipi.it/texts/nlang/english.200MB.gz
DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.di.unipi.it/texts/xml/dblp.xml.200MB.gz
DNA;../data/dna.200MB;dna.200MB;http://pizzachili.di.unipi.it/texts/dna/dna.200MB.gz
PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.di.unipi.it/texts/protein/proteins.200MB.gz
SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.di.unipi.it/texts/code/sources.200MB.gz
ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.dcc.uchile.cl/texts/nlang/english.200MB.gz
DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.dcc.uchile.cl/texts/xml/dblp.xml.200MB.gz
DNA;../data/dna.200MB;dna.200MB;http://pizzachili.dcc.uchile.cl/texts/dna/dna.200MB.gz
PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.dcc.uchile.cl/texts/protein/proteins.200MB.gz
SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.dcc.uchile.cl/texts/code/sources.200MB.gz
#INFLUENZA;../data/influenza;influenza;http://pizzachili.dcc.uchile.cl/repcorpus/real/influenza.gz
#EINSTEIN-de;../data/einstein.de.txt;einstein-de;http://pizzachili.dcc.uchile.cl/repcorpus/real/einstein.de.txt.gz
#EINSTEIN-en;../data/einstein.en.txt;einstein-en;http://pizzachili.dcc.uchile.cl/repcorpus/real/einstein.en.txt.gz
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2 changes: 1 addition & 1 deletion benchmark/indexing_extract/README.md
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Expand Up @@ -86,7 +86,7 @@ are extracted.
indexes should be listed in the report and which style should be used.

[sdsl]: https://github.com/simongog/sdsl "sdsl"
[pz]: http://pizzachili.di.unipi.it "Pizza&Chili"
[pz]: http://pizzachili.dcc.uchile.cl/ "Pizza&Chili"
[RPJ]: http://www.r-project.org/ "R"
[LT]: http://www.tug.org/applications/pdftex/ "pdflatex"
[RES]: https://github.com/simongog/simongog.github.com/raw/master/assets/images/extract.pdf "extract.pdf"
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10 changes: 5 additions & 5 deletions benchmark/indexing_extract/test_case.config
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Expand Up @@ -3,8 +3,8 @@
# (2) Path to the test file
# (3) LaTeX name
# (4) Download link (if the test is available online)
ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.di.unipi.it/texts/nlang/english.200MB.gz
DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.di.unipi.it/texts/xml/dblp.xml.200MB.gz
DNA;../data/dna.200MB;dna.200MB;http://pizzachili.di.unipi.it/texts/dna/dna.200MB.gz
PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.di.unipi.it/texts/protein/proteins.200MB.gz
SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.di.unipi.it/texts/code/sources.200MB.gz
ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.dcc.uchile.cl/texts/nlang/english.200MB.gz
DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.dcc.uchile.cl/texts/xml/dblp.xml.200MB.gz
DNA;../data/dna.200MB;dna.200MB;http://pizzachili.dcc.uchile.cl/texts/dna/dna.200MB.gz
PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.dcc.uchile.cl/texts/protein/proteins.200MB.gz
SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.dcc.uchile.cl/texts/code/sources.200MB.gz
2 changes: 1 addition & 1 deletion benchmark/indexing_locate/README.md
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Expand Up @@ -84,7 +84,7 @@ We use the methodology of [Ferragina et al.][FGNV08] (Section 5.3):
indexes should be listed in the report and which style should be used.

[sdsl]: https://github.com/simongog/sdsl "sdsl"
[pz]: http://pizzachili.di.unipi.it "Pizza&Chili"
[pz]: http://pizzachili.dcc.uchile.cl/ "Pizza&Chili"
[RPJ]: http://www.r-project.org/ "R"
[LT]: http://www.tug.org/applications/pdftex/ "pdflatex"
[RES]: https://github.com/simongog/simongog.github.com/raw/master/assets/images/locate.pdf "locate.pdf"
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10 changes: 5 additions & 5 deletions benchmark/indexing_locate/test_case.config
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Expand Up @@ -3,8 +3,8 @@
# (2) Path to the test file
# (3) LaTeX name
# (4) Download link (if the test is available online)
ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.di.unipi.it/texts/nlang/english.200MB.gz
DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.di.unipi.it/texts/xml/dblp.xml.200MB.gz
DNA;../data/dna.200MB;dna.200MB;http://pizzachili.di.unipi.it/texts/dna/dna.200MB.gz
PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.di.unipi.it/texts/protein/proteins.200MB.gz
SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.di.unipi.it/texts/code/sources.200MB.gz
ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.dcc.uchile.cl/texts/nlang/english.200MB.gz
DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.dcc.uchile.cl/texts/xml/dblp.xml.200MB.gz
DNA;../data/dna.200MB;dna.200MB;http://pizzachili.dcc.uchile.cl/texts/dna/dna.200MB.gz
PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.dcc.uchile.cl/texts/protein/proteins.200MB.gz
SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.dcc.uchile.cl/texts/code/sources.200MB.gz
10 changes: 5 additions & 5 deletions benchmark/lcp/test_case.config
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Expand Up @@ -3,11 +3,11 @@
# (2) Path to the test file
# (3) LaTeX name
# (4) Download link (if the test is available online)
ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.di.unipi.it/texts/nlang/english.200MB.gz
DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.di.unipi.it/texts/xml/dblp.xml.200MB.gz
DNA;../data/dna.200MB;dna.200MB;http://pizzachili.di.unipi.it/texts/dna/dna.200MB.gz
PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.di.unipi.it/texts/protein/proteins.200MB.gz
SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.di.unipi.it/texts/code/sources.200MB.gz
ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.dcc.uchile.cl/texts/nlang/english.200MB.gz
DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.dcc.uchile.cl/texts/xml/dblp.xml.200MB.gz
DNA;../data/dna.200MB;dna.200MB;http://pizzachili.dcc.uchile.cl/texts/dna/dna.200MB.gz
PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.dcc.uchile.cl/texts/protein/proteins.200MB.gz
SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.dcc.uchile.cl/texts/code/sources.200MB.gz
INFLUENZA;../data/influenza;influenza;http://pizzachili.dcc.uchile.cl/repcorpus/real/influenza.gz
EINSTEIN-de;../data/einstein.de.txt;einstein-de;http://pizzachili.dcc.uchile.cl/repcorpus/real/einstein.de.txt.gz
EINSTEIN-en;../data/einstein.en.txt;einstein-en;http://pizzachili.dcc.uchile.cl/repcorpus/real/einstein.en.txt.gz
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10 changes: 5 additions & 5 deletions benchmark/self_delimiting_codes/test_case.config
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Expand Up @@ -5,11 +5,11 @@
# (4) Download link (if the test is available online)
# (5) Test file type(0: serialized int_vector<>, 1: byte sequence, 2: 16-bit word sequence, 4: 32-bit word sequence, 8: 64-bit word sequence, d: Parse decimal numbers)

#ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.di.unipi.it/texts/nlang/english.200MB.gz;1
#DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.di.unipi.it/texts/xml/dblp.xml.200MB.gz;1
#DNA;../data/dna.200MB;dna.200MB;http://pizzachili.di.unipi.it/texts/dna/dna.200MB.gz;1
#PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.di.unipi.it/texts/protein/proteins.200MB.gz;1
#SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.di.unipi.it/texts/code/sources.200MB.gz;1
#ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.dcc.uchile.cl/texts/nlang/english.200MB.gz;1
#DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.dcc.uchile.cl/texts/xml/dblp.xml.200MB.gz;1
#DNA;../data/dna.200MB;dna.200MB;http://pizzachili.dcc.uchile.cl/texts/dna/dna.200MB.gz;1
#PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.dcc.uchile.cl/texts/protein/proteins.200MB.gz;1
#SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.dcc.uchile.cl/texts/code/sources.200MB.gz;1
INFLUENZA;../data/influenza;influenza;http://pizzachili.dcc.uchile.cl/repcorpus/real/influenza.gz;1
EINSTEIN-de;../data/einstein.de.txt;einstein-de;http://pizzachili.dcc.uchile.cl/repcorpus/real/einstein.de.txt.gz;1
#EINSTEIN-en;../data/einstein.en.txt;einstein-en;http://pizzachili.dcc.uchile.cl/repcorpus/real/einstein.en.txt.gz;1
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20 changes: 10 additions & 10 deletions benchmark/wavelet_trees/test_case.config
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Expand Up @@ -5,11 +5,11 @@
# (4) Download link (if the test is available online)
# (5) Test file type(0: serialized int_vector<>, 1: byte sequence, 2: 16-bit word sequence, 4: 32-bit word sequence, 8: 64-bit word sequence, d: Parse decimal numbers)
# (6) Input type for wavelet tree construction (PLAIN: (2) is used as input, BWT: The BWT for (2) will be constructed and used as input)
#ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.di.unipi.it/texts/nlang/english.200MB.gz;1;PLAIN
#DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.di.unipi.it/texts/xml/dblp.xml.200MB.gz;1;PLAIN
#DNA;../data/dna.200MB;dna.200MB;http://pizzachili.di.unipi.it/texts/dna/dna.200MB.gz;1;PLAIN
#PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.di.unipi.it/texts/protein/proteins.200MB.gz;1;PLAIN
#SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.di.unipi.it/texts/code/sources.200MB.gz;1;PLAIN
#ENGLISH;../data/english.200MB;english.200MB;http://pizzachili.dcc.uchile.cl/texts/nlang/english.200MB.gz;1;PLAIN
#DBLPXML;../data/dblp.xml.200MB;dblp.xml.200MB;http://pizzachili.dcc.uchile.cl/texts/xml/dblp.xml.200MB.gz;1;PLAIN
#DNA;../data/dna.200MB;dna.200MB;http://pizzachili.dcc.uchile.cl/texts/dna/dna.200MB.gz;1;PLAIN
#PROTEINS;../data/proteins.200MB;proteins.200MB;http://pizzachili.dcc.uchile.cl/texts/protein/proteins.200MB.gz;1;PLAIN
#SOURCES;../data/sources.200MB;sources.200MB;http://pizzachili.dcc.uchile.cl/texts/code/sources.200MB.gz;1;PLAIN
#INFLUENZA;../data/influenza;influenza;http://pizzachili.dcc.uchile.cl/repcorpus/real/influenza.gz;1;PLAIN
#EINSTEIN-de;../data/einstein.de.txt;einstein-de;http://pizzachili.dcc.uchile.cl/repcorpus/real/einstein.de.txt.gz;1;PLAIN
#EINSTEIN-en;../data/einstein.en.txt;einstein-en;http://pizzachili.dcc.uchile.cl/repcorpus/real/einstein.en.txt.gz;1;PLAIN
Expand All @@ -18,11 +18,11 @@
#E_COLI;../data/Escherichia_Coli;E.coli;http://pizzachili.dcc.uchile.cl/repcorpus/real/Escherichia_Coli.gz;1;PLAIN
ENWIKISMLINT;../data/enwiki-20130805-pages-articles1.int.sdsl;enwiki-sml-int;http://people.eng.unimelb.edu.au/sgog/data/enwiki-20130805-pages-articles1.int.sdsl.gz;0;PLAIN

#ENGLISH_BWT;../data/english.200MB;english.200MB-bwt;http://pizzachili.di.unipi.it/texts/nlang/english.200MB.gz;1;BWT
#DBLPXML_BWT;../data/dblp.xml.200MB;dblp.xml.200MB-bwt;http://pizzachili.di.unipi.it/texts/xml/dblp.xml.200MB.gz;1;BWT
#DNA_BWT;../data/dna.200MB;dna.200MB-bwt;http://pizzachili.di.unipi.it/texts/dna/dna.200MB.gz;1;BWT
#PROTEINS_BWT;../data/proteins.200MB;proteins.200MB-bwt;http://pizzachili.di.unipi.it/texts/protein/proteins.200MB.gz;1;BWT
#SOURCES_BWT;../data/sources.200MB;sources.200MB-bwt;http://pizzachili.di.unipi.it/texts/code/sources.200MB.gz;1;BWT
#ENGLISH_BWT;../data/english.200MB;english.200MB-bwt;http://pizzachili.dcc.uchile.cl/texts/nlang/english.200MB.gz;1;BWT
#DBLPXML_BWT;../data/dblp.xml.200MB;dblp.xml.200MB-bwt;http://pizzachili.dcc.uchile.cl/texts/xml/dblp.xml.200MB.gz;1;BWT
#DNA_BWT;../data/dna.200MB;dna.200MB-bwt;http://pizzachili.dcc.uchile.cl/texts/dna/dna.200MB.gz;1;BWT
#PROTEINS_BWT;../data/proteins.200MB;proteins.200MB-bwt;http://pizzachili.dcc.uchile.cl/texts/protein/proteins.200MB.gz;1;BWT
#SOURCES_BWT;../data/sources.200MB;sources.200MB-bwt;http://pizzachili.dcc.uchile.cl/texts/code/sources.200MB.gz;1;BWT
#INFLUENZA_BWT;../data/influenza;influenza-bwt;http://pizzachili.dcc.uchile.cl/repcorpus/real/influenza.gz;1;BWT
#EINSTEIN-de_BWT;../data/einstein.de.txt;einstein-de-bwt;http://pizzachili.dcc.uchile.cl/repcorpus/real/einstein.de.txt.gz;1;BWT
#EINSTEIN-en_BWT;../data/einstein.en.txt;einstein-en-bwt;http://pizzachili.dcc.uchile.cl/repcorpus/real/einstein.en.txt.gz;1;BWT
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