Caquingora

• Renaming function g.shell.GGIR to GGIR and adding new function g.shell.GGIR as a wrapper function around GGIR function to preserve functionality.
• Deprecating functionality to read GENEA bin files (not to be confused with GENEActiv), because dependency matlab is about to be archived.
  Once matlab is back online we will reinsert this functionality.
• Cosinor analysis now accounts for DST (see vignette for details)

Loma Plata

• Part 2: IVIS now able to handle missing data points
• Part 2: IVIS option added to specify acceleration threshold when using IVIS.activity.metric=2
• Part 2: Dependency added to ActCR to perform Cosinor and Extended cosinor analyses, see new argument cosinor.
• General: If there is only 1 file to be processed then code skips the parallel processing .

Escaguey

• Vignette for read.myacc.csv function included.
• Parameter objects documentation moved to g.shell.GGIR.
• Part1: Now auto-converts files with GT3X extension to gt3x as this is required for read.gt3x.
• Part2 report: Number of days to plot now auto scales to length of measurement.
• Part2 report: Fixed bug introduced in 2.6-3 making it impossible to generate a report for more than 1 file and fix bug introduced in 2.6-4 messing up the merging of files.
• Part4: Advanced sleeplog handling further improved as it now also handles dates in sleeplog far beyond recording dates.
• Part4: Removed unnecessary warning while loading sleeplog.

Anaricapay

• Part4: Bug fixed in handling of advanced sleeplog data when start of acc recording does not match start of sleeplog
• Deprecated functionality for reading GENEActiv csv files through g.readaccfile

(New release now as the bugs in 2.6-3 were possibly problematic for some users)

Pachinche

• Part 2: Non-user facing arguments and object named BodyLocation replaced by sensor.location to be consistent with the term sensor.location used in part 3.
• Minor documentation updates to cover brondcounts and to reflect that bout.metric is no longer 4 by default.
• Minor change to parallel processing so that GGIR does not create a cluster larger than the number of files to process. Fixes #535
• Part 4: Fix bug #531 re. sleeplog being ignored if first night is missing
• Part 4: Now relies more on ID extraction in part 1-3 and only attempts to extract ID from filename if that fails. Previously it extracted the ID twice.
• Report generation: Speed up implementation of rounding decimal places as introduced in release 2.6-1

Boa Esperança

• Part 1: Can now handle .gt3x produced by CentrePoint but for now user needs to change upercase file extension to lowercase
• Part 1: Fixed issue #520 with handling Movisens data
• Part 1: Fixed issue #523 with calibration of ActiGraph csv files
• General: Prevent redundant warnings resulting from some unnecessary checks of params objects
• Report generation per window: Fix undefined function call introduced in 2.6-1

Alto Huambuno

• Part 1: Fixed bug that prohibitted processing files in subfolders.
• Part 1: Dynamic range can now be extracted from Axivity .cwa files when not equal to 8g.
• Part 2: Qwindows logically ordered in reports.
• Part 2: Fixed bug #516 regarding passing on of dateformat.
• Part 4: Fixed bug introduced in 2.6-0 relating to sleeplog guider being assined even when no sleeplog used.
• Part 5: Improved handling of missing sleep estimate for first night.
• General: Fix bug introduced in 2.6-0 relating to storage of configuration file on comma-separated machines
• General: GGIR reports are now saved with a maximum of 3 decimal places for numeric variables.

Ibarreta

• Part 1: Fixed warning when working with a vector of filenames as argument to datadir.
• Part 2: Added argument max_calendar_days to allow user to control the maximum number of calendar days to include in analysis, irrespective of argument strategy value.
• Part 2: Argument maxdur is no longer specific to strategy 1, but applied irrespective of value of argument strategy.
• Part 4: Fixed issue that sleeplog is indicated as the guider even when when corresponding timestamp cannot resolve to timestamp.
• Part 5: Time series output filenames now auto-stripped from [.]|rdata|csv|cwa|gt3x|bin character string.
• Fixed issues introduced in 2.5-6 release: maxNcores was not defined in part 1, params_output and not passed on to part 3, and params objects were unneccesarily repeatedly checked.

What's Changed

• Issue497 minorissues by @vincentvanhees in #498
• Issue499 move spo to df by @vincentvanhees in #500
• Add optional max_calendar_days argument by @vincentvanhees in #503
• Issue504 handling invalid sleeplog entries by @vincentvanhees in #505

Full Changelog: 2.5-6...2.6-0

Nueva Loja

Changes:

• Internal re-structuring: Arguments are now internally passed via parameter objects to make code and code documentation easier to navigate. This new structure preserve backward compatibility with the user's older R scripts.

Note: I have put this in a separate release from other recent changes in the previous release (2.5-5) earlier today, to help isolate the cause of issues if and when they arise.

Nueva Holanda

• Fixed bug #484 affecting part 5 report not being able to generated because non-matching columns in milestone data
• Part 2: Fix bug, BrondCounts and ZeroCrosssing Counts now no long auto-scaled by 1000 like all the other metrics.
• Part 3: Fixed warning when SRI is calculated on DST day with 23 hours.
• Part 5: sibreport and timeseries now stored per sib definition, previously only for last definition.