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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 71 34

  2. curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 129 31

  3. curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 8

  4. cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 33 13

  5. presentations Public

    A repository for public presentations

    TeX 6 10

  6. BugSigDB Public

    A microbial signatures database

    JavaScript 8 7

Repositories

Showing 10 of 106 repositories
  • MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 71 34 4 1 Updated Apr 22, 2025
  • lefser Public

    R implementation of the LEfSe method

    R 58 5 8 1 Updated Apr 22, 2025
  • cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 33 13 5 0 Updated Apr 22, 2025
  • curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 129 Artistic-2.0 31 14 1 Updated Apr 21, 2025
  • MicrobiomeBenchmarkDataAnalyses Public

    Analyses using the datasets provided by the MicrobiomeBenchmarkData package.

    R 0 1 0 0 Updated Apr 18, 2025
  • BugSigDBExports Public

    BugSigDB data files

    R 2 3 6 0 Updated Apr 17, 2025
  • bedbaser Public

    An R client for bedbase.org

    R 1 0 5 0 Updated Apr 16, 2025
  • bugsigdbr Public

    R-side access to published microbial signatures from BugSigDB

    R 3 GPL-3.0 3 6 0 Updated Apr 16, 2025
  • XeniumIO Public

    software for importing 10X Xenium data

    R 0 0 0 0 Updated Apr 16, 2025
  • VisiumIO Public

    Import spaceranger output and 10X spatial data

    R 0 0 1 0 Updated Apr 16, 2025
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