security(weave_query): Upgrade Pyarrow to 17.0.0 #3617

domphan-wandb · 2025-02-06T18:15:28Z

Description

This PR upgrades and pins pyarrow to 17.0.0.

16.1.0 -> 17.0.0 Upgrade Issues

This change in pyarrow introduced stricter checks when using pa.ListArray.from_arrays(). Specifically, we cannot use both a null mask with an offset that has nulls.

  if (null_bitmap != nullptr && offsets.null_count() > 0) {
    return Status::Invalid(
        "Ambiguous to specify both validity map and offsets with nulls");
  }

This new strictness caused many of our unit tests to fail:

A strange observation
I stumbled upon this accidentally, but just checking the null count in the offsets like new_offsets.null_count makes all the unit tests pass.

My theory:
It looks like when we're getting new offsets during concatenation, we use compute functions (which are lazy), so when the offset is checked for nulls on the cpp side, it's possible that it's in an intermediate state with nulls. When evaluating the null_count in python, this forces the compute functions to evaluate, resulting in offsets without nulls.

Solution

I created a new function called safe_list_array_from_arrays that handles the strictness. It checks the null_count of the offsets:

if there are nulls, it calls pa.ListArray.from_arrays() without a mask, then uses pc.if_else to set nulls.
if there are no nulls, it calls pa.ListArray.from_arrays() with the mask.

The outcome:
offset.null_count is called which triggers evaluation of the offset array
a. If there are no nulls in the offset array, the mask is used, and the behavior is the same as before the upgrade
b. If there are nulls in the offset array, then a mask isn't used, but pc.if_else handles nulling values in the resulting array.

Testing

I used the unit test failures to test my changes.

Summary by CodeRabbit

Chores
- Updated the key dependency to enforce version 17.0.0 for improved compatibility with current tests.
New Features
- Introduced an enhanced mechanism for constructing list arrays, ensuring more robust handling of null values and better data consistency during array operations.

circle-job-mirror · 2025-02-06T18:31:57Z

Preview this PR with FeatureBee: https://beta.wandb.ai/?betaVersion=a29ecabd16894f607ae8e37c4a53687d9f9c5baf

nicholaspun-wandb · 2025-02-06T19:10:43Z

The nox tests should be resolved with a rebase to current master, looks like the clickhouse issues from a couple days ago
The build issue looks like a mismatch between weave and weave_query?

domphan-wandb · 2025-02-06T19:11:35Z

The nox tests should be resolved with a rebase to current master, looks like the clickhouse issues from a couple days ago

The build issue looks like a mismatch between weave and weave_query?

yeah, build ci issue won't pass until i can merge this in: https://github.com/wandb/core/commit/6024445f236bdcd91f082a55138bcfc17b3c97d1

ty, i'll rebase

wandb-kc · 2025-02-11T19:31:49Z

Do we need to bump pyarrow here as well? https://github.com/wandb/core/blob/1fcfde879bdf5e8a5d39c69b189d9b2cc2795d67/services/weave-python/requirements.txt#L11

domphan-wandb · 2025-02-11T19:33:08Z

Do we need to bump pyarrow here as well? https://github.com/wandb/core/blob/1fcfde879bdf5e8a5d39c69b189d9b2cc2795d67/services/weave-python/requirements.txt#L11

Yup, here's the companion PR for it: https://github.com/wandb/core/pull/27312

When this gets stamped, I'll merge the core PR in first, then this PR

coderabbitai · 2025-02-12T16:27:32Z

Walkthrough

The changes update the pyarrow dependency in the requirements file from a version range to a fixed version (17.0.0). Additionally, several modules have been refactored to introduce and utilize a new helper function, safe_list_array_from_arrays. This function replaces direct calls to pa.ListArray.from_arrays across multiple functions, improving the handling of null offsets and validity masks during list array creation.

Changes

File(s)	Change Summary
`weave_query/requirements.legacy.txt`	Updated `pyarrow` dependency from range (`>=14.0.1,<17.0.0`) to fixed version (`==17.0.0`).
`weave_query/weave_query/arrow/*`, `weave_query/weave_query/ops_arrow/arraylist_ops.py`	Introduced `safe_list_array_from_arrays` for robust list array creation. Modified functions (`rewrite_weavelist_refs`, `recursively_encode_pyarrow_strings_as_dictionaries`, `_concatenate_lists`, `recursively_build_pyarrow_array`, `_map_column`, `dropna`) to use this new helper instead of direct `pa.ListArray.from_arrays` calls.
`weave-js/src/core/ops/primitives/list.ts`	Minor adjustment to console log statement in `opGroupby` function, adding an empty string to the log message.

Sequence Diagram(s)

sequenceDiagram
    participant Caller as Caller Function
    participant Safe as safe_list_array_from_arrays
    participant ListArray as pa.ListArray.from_arrays
    Caller ->> Safe: Call with offsets, values, mask
    alt Offsets contain nulls
        Safe ->> ListArray: Create masked ListArray
    else Offsets valid
        Safe ->> ListArray: Create ListArray normally
    end
    ListArray -->> Safe: Return constructed ListArray
    Safe -->> Caller: Return safe ListArray

Poem

I'm a rabbit coding under twinkling skies,
Hopping through modules with bright, keen eyes.
Safe arrays now guard each list with cheer,
Nulls and masks handled, nothing to fear.
A bouncing delight—carrots and code, oh my! 🥕

📜 Recent review details

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Actionable comments posted: 0

🧹 Nitpick comments (1)

weave_query/weave_query/arrow/arrow.py (1)
484-484: Remove trailing whitespace.

There is a trailing whitespace at the end of line 484.
-    # between null offsets and masks via offsets.null_count(). When concatenating 
+    # between null offsets and masks via offsets.null_count(). When concatenating
🧰 Tools

🪛 Ruff (0.8.2)

484-484: Trailing whitespace

Remove trailing whitespace

(W291)

📜 Review details

Configuration used: .coderabbit.yaml
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Reviewing files that changed from the base of the PR and between b60c820 and 316ad0e.

📒 Files selected for processing (7)

weave_query/requirements.legacy.txt (1 hunks)
weave_query/weave_query/arrow/arrow.py (2 hunks)
weave_query/weave_query/arrow/arrow_tags.py (2 hunks)
weave_query/weave_query/arrow/concat.py (3 hunks)
weave_query/weave_query/arrow/convert.py (2 hunks)
weave_query/weave_query/arrow/list_.py (2 hunks)
weave_query/weave_query/ops_arrow/arraylist_ops.py (2 hunks)

🧰 Additional context used

📓 Path-based instructions (1)

`**/*.py`: Focus on pythonic code patterns. Check for proper...

**/*.py: Focus on pythonic code patterns.
Check for proper exception handling.
Verify type hints usage where applicable.
Look for potential performance improvements.
Don't comment on formatting if black/isort is configured.
Check for proper dependency injection patterns.
Verify proper async handling if applicable.

weave_query/weave_query/arrow/arrow_tags.py
weave_query/weave_query/arrow/concat.py
weave_query/weave_query/arrow/arrow.py
weave_query/weave_query/arrow/convert.py
weave_query/weave_query/ops_arrow/arraylist_ops.py
weave_query/weave_query/arrow/list_.py

🪛 Ruff (0.8.2)

weave_query/weave_query/arrow/arrow.py

484-484: Trailing whitespace

Remove trailing whitespace

(W291)

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GitHub Check: Legacy (Query Service) Python unit tests (1)
GitHub Check: Legacy (Query Service) Python unit tests (0)
GitHub Check: Trace nox tests (3, 13, pandas-test)
GitHub Check: Trace nox tests (3, 13, vertexai)
GitHub Check: Trace nox tests (3, 13, openai)
GitHub Check: Trace nox tests (3, 13, notdiamond)
GitHub Check: Trace nox tests (3, 13, mistral1)
GitHub Check: Trace nox tests (3, 13, mistral0)
GitHub Check: Trace nox tests (3, 13, llamaindex)
GitHub Check: Trace nox tests (3, 13, litellm)
GitHub Check: Trace nox tests (3, 13, instructor)
GitHub Check: Trace nox tests (3, 13, huggingface)
GitHub Check: Trace nox tests (3, 13, groq)
GitHub Check: Trace nox tests (3, 13, cerebras)
GitHub Check: Trace nox tests (3, 13, trace_server)
GitHub Check: Trace nox tests (3, 13, trace)
GitHub Check: Trace nox tests (3, 12, pandas-test)
GitHub Check: Trace nox tests (3, 12, scorers)
GitHub Check: Trace nox tests (3, 12, vertexai)
GitHub Check: Trace nox tests (3, 12, openai)
GitHub Check: Trace nox tests (3, 12, notdiamond)
GitHub Check: Trace nox tests (3, 12, mistral1)
GitHub Check: Trace nox tests (3, 12, mistral0)
GitHub Check: Trace nox tests (3, 12, llamaindex)
GitHub Check: Trace nox tests (3, 12, litellm)
GitHub Check: Trace nox tests (3, 12, langchain)
GitHub Check: Trace nox tests (3, 12, instructor)
GitHub Check: Trace nox tests (3, 12, google_ai_studio)
GitHub Check: Trace nox tests (3, 12, huggingface)
GitHub Check: Trace nox tests (3, 12, groq)
GitHub Check: Trace nox tests (3, 12, dspy)
GitHub Check: Trace nox tests (3, 12, cohere)
GitHub Check: Trace nox tests (3, 12, cerebras)
GitHub Check: Trace nox tests (3, 12, bedrock)
GitHub Check: Trace nox tests (3, 12, anthropic)
GitHub Check: Trace nox tests (3, 12, trace_server)
GitHub Check: Trace nox tests (3, 12, trace)
GitHub Check: Trace nox tests (3, 11, pandas-test)
GitHub Check: Trace nox tests (3, 11, scorers)
GitHub Check: Trace nox tests (3, 11, openai)
GitHub Check: Trace nox tests (3, 11, notdiamond)
GitHub Check: Trace nox tests (3, 11, mistral1)
GitHub Check: Trace nox tests (3, 11, mistral0)
GitHub Check: Trace nox tests (3, 11, llamaindex)
GitHub Check: Trace nox tests (3, 11, litellm)
GitHub Check: Trace nox tests (3, 11, langchain)
GitHub Check: Trace nox tests (3, 11, instructor)
GitHub Check: Trace nox tests (3, 11, google_ai_studio)
GitHub Check: Trace nox tests (3, 11, huggingface)
GitHub Check: Trace nox tests (3, 11, groq)
GitHub Check: Trace nox tests (3, 11, dspy)
GitHub Check: Trace nox tests (3, 11, cohere)
GitHub Check: Trace nox tests (3, 11, cerebras)
GitHub Check: Trace nox tests (3, 11, bedrock)
GitHub Check: Trace nox tests (3, 11, anthropic)
GitHub Check: Trace nox tests (3, 11, trace_server)
GitHub Check: Trace nox tests (3, 11, trace)
GitHub Check: Trace nox tests (3, 10, pandas-test)
GitHub Check: Trace nox tests (3, 10, scorers)
GitHub Check: Trace nox tests (3, 10, vertexai)
GitHub Check: Trace nox tests (3, 10, openai)
GitHub Check: Trace nox tests (3, 10, notdiamond)
GitHub Check: Trace nox tests (3, 10, mistral1)
GitHub Check: Trace nox tests (3, 10, mistral0)
GitHub Check: Trace nox tests (3, 10, llamaindex)
GitHub Check: Trace nox tests (3, 10, litellm)
GitHub Check: Trace nox tests (3, 10, langchain)
GitHub Check: Trace nox tests (3, 10, instructor)
GitHub Check: Trace nox tests (3, 10, huggingface)
GitHub Check: Trace nox tests (3, 10, dspy)
GitHub Check: Trace nox tests (3, 10, cohere)
GitHub Check: Trace nox tests (3, 10, bedrock)
GitHub Check: Trace nox tests (3, 10, trace_server)
GitHub Check: Trace nox tests (3, 10, trace)
GitHub Check: Trace nox tests (3, 9, pandas-test)
GitHub Check: Trace nox tests (3, 9, scorers)
GitHub Check: Trace nox tests (3, 9, vertexai)
GitHub Check: Trace nox tests (3, 9, openai)
GitHub Check: Trace nox tests (3, 9, notdiamond)
GitHub Check: Trace nox tests (3, 9, mistral1)
GitHub Check: Trace nox tests (3, 9, mistral0)
GitHub Check: Trace nox tests (3, 9, llamaindex)
GitHub Check: Trace nox tests (3, 9, litellm)
GitHub Check: Trace nox tests (3, 9, langchain)
GitHub Check: Legacy (Query Service) Python unit tests (1)
GitHub Check: Legacy (Query Service) Python unit tests (0)
GitHub Check: Trace nox tests (3, 13, pandas-test)
GitHub Check: Trace nox tests (3, 13, vertexai)
GitHub Check: Trace nox tests (3, 13, openai)
GitHub Check: Trace nox tests (3, 13, notdiamond)
GitHub Check: Trace nox tests (3, 13, mistral1)
GitHub Check: Trace nox tests (3, 13, mistral0)
GitHub Check: Trace nox tests (3, 13, llamaindex)
GitHub Check: Trace nox tests (3, 13, litellm)
GitHub Check: Trace nox tests (3, 13, instructor)
GitHub Check: Trace nox tests (3, 13, huggingface)
GitHub Check: Trace nox tests (3, 13, groq)
GitHub Check: Trace nox tests (3, 13, cerebras)
GitHub Check: Trace nox tests (3, 13, trace_server)
GitHub Check: Trace nox tests (3, 13, trace)
GitHub Check: Trace nox tests (3, 12, pandas-test)
GitHub Check: Trace nox tests (3, 12, scorers)
GitHub Check: Trace nox tests (3, 12, vertexai)
GitHub Check: Trace nox tests (3, 12, openai)
GitHub Check: Trace nox tests (3, 12, notdiamond)
GitHub Check: Trace nox tests (3, 12, mistral1)
GitHub Check: Trace nox tests (3, 12, mistral0)
GitHub Check: Trace nox tests (3, 12, llamaindex)
GitHub Check: Trace nox tests (3, 12, litellm)
GitHub Check: Trace nox tests (3, 12, langchain)
GitHub Check: Trace nox tests (3, 12, instructor)
GitHub Check: Trace nox tests (3, 12, google_ai_studio)
GitHub Check: Trace nox tests (3, 12, huggingface)
GitHub Check: Trace nox tests (3, 12, groq)
GitHub Check: Trace nox tests (3, 12, dspy)
GitHub Check: Trace nox tests (3, 12, cohere)
GitHub Check: Trace nox tests (3, 12, cerebras)
GitHub Check: Trace nox tests (3, 12, bedrock)
GitHub Check: Trace nox tests (3, 12, anthropic)
GitHub Check: Trace nox tests (3, 12, trace_server)
GitHub Check: Trace nox tests (3, 12, trace)
GitHub Check: Trace nox tests (3, 11, pandas-test)
GitHub Check: Trace nox tests (3, 11, scorers)
GitHub Check: Trace nox tests (3, 11, openai)
GitHub Check: Trace nox tests (3, 11, notdiamond)
GitHub Check: Trace nox tests (3, 11, mistral1)
GitHub Check: Trace nox tests (3, 11, mistral0)
GitHub Check: Trace nox tests (3, 11, llamaindex)
GitHub Check: Trace nox tests (3, 11, litellm)
GitHub Check: Trace nox tests (3, 11, langchain)
GitHub Check: Trace nox tests (3, 11, instructor)
GitHub Check: Trace nox tests (3, 11, google_ai_studio)
GitHub Check: Trace nox tests (3, 11, huggingface)
GitHub Check: Trace nox tests (3, 11, groq)
GitHub Check: Trace nox tests (3, 11, dspy)
GitHub Check: Trace nox tests (3, 11, cerebras)
GitHub Check: Trace nox tests (3, 11, bedrock)
GitHub Check: Trace nox tests (3, 11, anthropic)
GitHub Check: Trace nox tests (3, 11, trace_server)
GitHub Check: Trace nox tests (3, 11, trace)
GitHub Check: Trace nox tests (3, 10, pandas-test)
GitHub Check: Trace nox tests (3, 10, scorers)
GitHub Check: Trace nox tests (3, 10, vertexai)
GitHub Check: Trace nox tests (3, 10, openai)
GitHub Check: Trace nox tests (3, 10, notdiamond)
GitHub Check: Trace nox tests (3, 10, mistral1)
GitHub Check: Trace nox tests (3, 10, llamaindex)
GitHub Check: Trace nox tests (3, 10, litellm)
GitHub Check: Trace nox tests (3, 10, langchain)
GitHub Check: Trace nox tests (3, 10, instructor)
GitHub Check: Trace nox tests (3, 10, huggingface)
GitHub Check: Trace nox tests (3, 10, dspy)
GitHub Check: Trace nox tests (3, 10, cohere)
GitHub Check: Trace nox tests (3, 10, bedrock)
GitHub Check: Trace nox tests (3, 10, trace_server)
GitHub Check: Trace nox tests (3, 10, trace)
GitHub Check: Trace nox tests (3, 9, pandas-test)
GitHub Check: Trace nox tests (3, 9, scorers)
GitHub Check: Trace nox tests (3, 9, vertexai)
GitHub Check: Trace nox tests (3, 9, openai)
GitHub Check: Trace nox tests (3, 9, notdiamond)
GitHub Check: Trace nox tests (3, 9, mistral1)
GitHub Check: Trace nox tests (3, 9, mistral0)
GitHub Check: Trace nox tests (3, 9, llamaindex)
GitHub Check: Trace nox tests (3, 9, litellm)
GitHub Check: Trace nox tests (3, 9, langchain)
GitHub Check: notify-wandb-core
GitHub Check: Legacy (Query Service) Python unit tests (1)
GitHub Check: Legacy (Query Service) Python unit tests (0)
GitHub Check: Trace nox tests (3, 13, pandas-test)
GitHub Check: Trace nox tests (3, 13, vertexai)
GitHub Check: Trace nox tests (3, 13, openai)
GitHub Check: Trace nox tests (3, 13, notdiamond)
GitHub Check: Trace nox tests (3, 13, mistral1)
GitHub Check: Trace nox tests (3, 13, mistral0)
GitHub Check: Trace nox tests (3, 13, llamaindex)
GitHub Check: Trace nox tests (3, 13, litellm)
GitHub Check: Trace nox tests (3, 13, instructor)
GitHub Check: Trace nox tests (3, 13, huggingface)
GitHub Check: Trace nox tests (3, 13, groq)
GitHub Check: Trace nox tests (3, 13, cerebras)
GitHub Check: Trace nox tests (3, 13, trace_server)
GitHub Check: Trace nox tests (3, 13, trace)
GitHub Check: Trace nox tests (3, 12, pandas-test)
GitHub Check: Trace nox tests (3, 12, scorers)
GitHub Check: Trace nox tests (3, 12, vertexai)
GitHub Check: Trace nox tests (3, 12, openai)
GitHub Check: Trace nox tests (3, 12, notdiamond)
GitHub Check: Trace nox tests (3, 12, mistral1)
GitHub Check: Trace nox tests (3, 12, mistral0)
GitHub Check: Trace nox tests (3, 12, llamaindex)
GitHub Check: Trace nox tests (3, 12, litellm)
GitHub Check: Trace nox tests (3, 12, langchain)
GitHub Check: Trace nox tests (3, 12, instructor)
GitHub Check: Trace nox tests (3, 12, google_ai_studio)
GitHub Check: Trace nox tests (3, 12, huggingface)
GitHub Check: Trace nox tests (3, 12, groq)
GitHub Check: Trace nox tests (3, 12, dspy)
GitHub Check: Trace nox tests (3, 12, cohere)
GitHub Check: Trace nox tests (3, 12, cerebras)
GitHub Check: Trace nox tests (3, 12, bedrock)
GitHub Check: Trace nox tests (3, 12, anthropic)
GitHub Check: Trace nox tests (3, 12, trace_server)
GitHub Check: Trace nox tests (3, 12, trace)
GitHub Check: Trace nox tests (3, 11, pandas-test)
GitHub Check: Trace nox tests (3, 11, scorers)
GitHub Check: Trace nox tests (3, 11, openai)
GitHub Check: Trace nox tests (3, 11, notdiamond)
GitHub Check: Trace nox tests (3, 11, mistral1)
GitHub Check: Trace nox tests (3, 11, mistral0)
GitHub Check: Trace nox tests (3, 11, llamaindex)
GitHub Check: Trace nox tests (3, 11, litellm)
GitHub Check: Trace nox tests (3, 11, langchain)
GitHub Check: Trace nox tests (3, 11, instructor)
GitHub Check: Trace nox tests (3, 11, google_ai_studio)
GitHub Check: Trace nox tests (3, 11, huggingface)
GitHub Check: Trace nox tests (3, 11, groq)
GitHub Check: Trace nox tests (3, 11, dspy)
GitHub Check: Trace nox tests (3, 11, cerebras)
GitHub Check: Trace nox tests (3, 11, anthropic)
GitHub Check: Trace nox tests (3, 11, trace_server)
GitHub Check: Trace nox tests (3, 11, trace)
GitHub Check: Trace nox tests (3, 10, pandas-test)
GitHub Check: Trace nox tests (3, 10, scorers)
GitHub Check: Trace nox tests (3, 10, vertexai)
GitHub Check: Trace nox tests (3, 10, openai)
GitHub Check: Trace nox tests (3, 10, notdiamond)
GitHub Check: Trace nox tests (3, 10, mistral1)
GitHub Check: Trace nox tests (3, 10, llamaindex)
GitHub Check: Trace nox tests (3, 10, litellm)
GitHub Check: Trace nox tests (3, 10, langchain)
GitHub Check: Trace nox tests (3, 10, instructor)
GitHub Check: Trace nox tests (3, 10, dspy)
GitHub Check: Trace nox tests (3, 10, cohere)
GitHub Check: Trace nox tests (3, 10, bedrock)
GitHub Check: Trace nox tests (3, 10, trace_server)
GitHub Check: Trace nox tests (3, 10, trace)
GitHub Check: Trace nox tests (3, 9, pandas-test)
GitHub Check: Trace nox tests (3, 9, scorers)
GitHub Check: Trace nox tests (3, 9, vertexai)
GitHub Check: Trace nox tests (3, 9, openai)
GitHub Check: Trace nox tests (3, 9, notdiamond)
GitHub Check: Trace nox tests (3, 9, mistral1)
GitHub Check: Trace nox tests (3, 9, mistral0)
GitHub Check: Trace nox tests (3, 9, llamaindex)
GitHub Check: Trace nox tests (3, 9, litellm)
GitHub Check: Trace nox tests (3, 9, langchain)
GitHub Check: notify-wandb-core
GitHub Check: Legacy (Query Service) Python unit tests (1)
GitHub Check: Legacy (Query Service) Python unit tests (0)
GitHub Check: Trace nox tests (3, 13, pandas-test)
GitHub Check: Trace nox tests (3, 13, vertexai)
GitHub Check: Trace nox tests (3, 13, openai)
GitHub Check: Trace nox tests (3, 13, notdiamond)
GitHub Check: Trace nox tests (3, 13, mistral1)
GitHub Check: Trace nox tests (3, 13, mistral0)
GitHub Check: Trace nox tests (3, 13, llamaindex)
GitHub Check: Trace nox tests (3, 13, litellm)
GitHub Check: Trace nox tests (3, 13, instructor)
GitHub Check: Trace nox tests (3, 13, huggingface)
GitHub Check: Trace nox tests (3, 13, groq)
GitHub Check: Trace nox tests (3, 13, cerebras)
GitHub Check: Trace nox tests (3, 13, trace_server)
GitHub Check: Trace nox tests (3, 13, trace)
GitHub Check: Trace nox tests (3, 12, pandas-test)
GitHub Check: Trace nox tests (3, 12, scorers)
GitHub Check: Trace nox tests (3, 12, vertexai)
GitHub Check: Trace nox tests (3, 12, openai)
GitHub Check: Trace nox tests (3, 12, notdiamond)
GitHub Check: Trace nox tests (3, 12, mistral1)
GitHub Check: Trace nox tests (3, 12, mistral0)
GitHub Check: Trace nox tests (3, 12, llamaindex)
GitHub Check: Trace nox tests (3, 12, litellm)
GitHub Check: Trace nox tests (3, 12, langchain)
GitHub Check: Trace nox tests (3, 12, instructor)
GitHub Check: Trace nox tests (3, 12, google_ai_studio)
GitHub Check: Trace nox tests (3, 12, huggingface)
GitHub Check: Trace nox tests (3, 12, groq)
GitHub Check: Trace nox tests (3, 12, dspy)
GitHub Check: Trace nox tests (3, 12, cohere)
GitHub Check: Trace nox tests (3, 12, cerebras)
GitHub Check: Trace nox tests (3, 12, bedrock)
GitHub Check: Trace nox tests (3, 12, anthropic)
GitHub Check: Trace nox tests (3, 12, trace_server)
GitHub Check: Trace nox tests (3, 12, trace)
GitHub Check: Trace nox tests (3, 11, pandas-test)
GitHub Check: Trace nox tests (3, 11, scorers)
GitHub Check: Trace nox tests (3, 11, notdiamond)
GitHub Check: Trace nox tests (3, 11, mistral1)
GitHub Check: Trace nox tests (3, 11, mistral0)
GitHub Check: Trace nox tests (3, 11, llamaindex)
GitHub Check: Trace nox tests (3, 11, litellm)
GitHub Check: Trace nox tests (3, 11, langchain)
GitHub Check: Trace nox tests (3, 11, instructor)
GitHub Check: Trace nox tests (3, 11, google_ai_studio)
GitHub Check: Trace nox tests (3, 11, huggingface)
GitHub Check: Trace nox tests (3, 11, groq)
GitHub Check: Trace nox tests (3, 11, dspy)
GitHub Check: Trace nox tests (3, 11, cerebras)
GitHub Check: Trace nox tests (3, 11, anthropic)
GitHub Check: Trace nox tests (3, 11, trace_server)
GitHub Check: Trace nox tests (3, 11, trace)
GitHub Check: Trace nox tests (3, 10, pandas-test)
GitHub Check: Trace nox tests (3, 10, scorers)
GitHub Check: Trace nox tests (3, 10, vertexai)
GitHub Check: Trace nox tests (3, 10, openai)
GitHub Check: Trace nox tests (3, 10, notdiamond)
GitHub Check: Trace nox tests (3, 10, llamaindex)
GitHub Check: Trace nox tests (3, 10, litellm)
GitHub Check: Trace nox tests (3, 10, langchain)
GitHub Check: Trace nox tests (3, 10, instructor)
GitHub Check: Trace nox tests (3, 10, dspy)
GitHub Check: Trace nox tests (3, 10, cohere)
GitHub Check: Trace nox tests (3, 10, bedrock)
GitHub Check: Trace nox tests (3, 10, trace_server)
GitHub Check: Trace nox tests (3, 10, trace)
GitHub Check: Trace nox tests (3, 9, pandas-test)
GitHub Check: Trace nox tests (3, 9, scorers)
GitHub Check: Trace nox tests (3, 9, vertexai)
GitHub Check: Trace nox tests (3, 9, openai)
GitHub Check: Trace nox tests (3, 9, notdiamond)
GitHub Check: Trace nox tests (3, 9, mistral1)
GitHub Check: Trace nox tests (3, 9, mistral0)
GitHub Check: Trace nox tests (3, 9, llamaindex)
GitHub Check: Trace nox tests (3, 9, litellm)
GitHub Check: Trace nox tests (3, 9, langchain)
GitHub Check: notify-wandb-core
GitHub Check: Legacy (Query Service) Python unit tests (1)
GitHub Check: Legacy (Query Service) Python unit tests (0)
GitHub Check: Trace nox tests (3, 13, pandas-test)
GitHub Check: Trace nox tests (3, 13, vertexai)
GitHub Check: Trace nox tests (3, 13, openai)
GitHub Check: Trace nox tests (3, 13, notdiamond)
GitHub Check: Trace nox tests (3, 13, mistral1)
GitHub Check: Trace nox tests (3, 13, mistral0)
GitHub Check: Trace nox tests (3, 13, llamaindex)
GitHub Check: Trace nox tests (3, 13, litellm)
GitHub Check: Trace nox tests (3, 13, instructor)
GitHub Check: Trace nox tests (3, 13, huggingface)
GitHub Check: Trace nox tests (3, 13, groq)
GitHub Check: Trace nox tests (3, 13, cerebras)
GitHub Check: Trace nox tests (3, 13, trace_server)
GitHub Check: Trace nox tests (3, 13, trace)
GitHub Check: Trace nox tests (3, 12, pandas-test)
GitHub Check: Trace nox tests (3, 12, scorers)
GitHub Check: Trace nox tests (3, 12, vertexai)
GitHub Check: Trace nox tests (3, 12, openai)
GitHub Check: Trace nox tests (3, 12, notdiamond)
GitHub Check: Trace nox tests (3, 12, mistral1)
GitHub Check: Trace nox tests (3, 12, mistral0)
GitHub Check: Trace nox tests (3, 12, llamaindex)
GitHub Check: Trace nox tests (3, 12, litellm)
GitHub Check: Trace nox tests (3, 12, langchain)
GitHub Check: Trace nox tests (3, 12, instructor)
GitHub Check: Trace nox tests (3, 12, google_ai_studio)
GitHub Check: Trace nox tests (3, 12, huggingface)
GitHub Check: Trace nox tests (3, 12, groq)
GitHub Check: Trace nox tests (3, 12, dspy)
GitHub Check: Trace nox tests (3, 12, cohere)
GitHub Check: Trace nox tests (3, 12, cerebras)
GitHub Check: Trace nox tests (3, 12, bedrock)
GitHub Check: Trace nox tests (3, 12, anthropic)
GitHub Check: Trace nox tests (3, 12, trace_server)
GitHub Check: Trace nox tests (3, 12, trace)
GitHub Check: Trace nox tests (3, 11, pandas-test)
GitHub Check: Trace nox tests (3, 11, scorers)
GitHub Check: Trace nox tests (3, 11, notdiamond)
GitHub Check: Trace nox tests (3, 11, mistral1)
GitHub Check: Trace nox tests (3, 11, mistral0)
GitHub Check: Trace nox tests (3, 11, llamaindex)
GitHub Check: Trace nox tests (3, 11, litellm)
GitHub Check: Trace nox tests (3, 11, langchain)
GitHub Check: Trace nox tests (3, 11, instructor)
GitHub Check: Trace nox tests (3, 11, google_ai_studio)
GitHub Check: Trace nox tests (3, 11, huggingface)
GitHub Check: Trace nox tests (3, 11, dspy)
GitHub Check: Trace nox tests (3, 11, cerebras)
GitHub Check: Trace nox tests (3, 11, anthropic)
GitHub Check: Trace nox tests (3, 11, trace_server)
GitHub Check: Trace nox tests (3, 11, trace)
GitHub Check: Trace nox tests (3, 10, pandas-test)
GitHub Check: Trace nox tests (3, 10, scorers)
GitHub Check: Trace nox tests (3, 10, vertexai)
GitHub Check: Trace nox tests (3, 10, notdiamond)
GitHub Check: Trace nox tests (3, 10, llamaindex)
GitHub Check: Trace nox tests (3, 10, litellm)
GitHub Check: Trace nox tests (3, 10, langchain)
GitHub Check: Trace nox tests (3, 10, instructor)
GitHub Check: Trace nox tests (3, 10, dspy)
GitHub Check: Trace nox tests (3, 10, cohere)
GitHub Check: Trace nox tests (3, 10, bedrock)
GitHub Check: Trace nox tests (3, 10, trace_server)
GitHub Check: Trace nox tests (3, 10, trace)
GitHub Check: Trace nox tests (3, 9, pandas-test)
GitHub Check: Trace nox tests (3, 9, scorers)
GitHub Check: Trace nox tests (3, 9, vertexai)
GitHub Check: Trace nox tests (3, 9, openai)
GitHub Check: Trace nox tests (3, 9, notdiamond)
GitHub Check: Trace nox tests (3, 9, mistral1)
GitHub Check: Trace nox tests (3, 9, mistral0)
GitHub Check: Trace nox tests (3, 9, llamaindex)
GitHub Check: Trace nox tests (3, 9, litellm)
GitHub Check: Trace nox tests (3, 9, langchain)
GitHub Check: notify-wandb-core
GitHub Check: Legacy (Query Service) Python unit tests (1)
GitHub Check: Legacy (Query Service) Python unit tests (0)
GitHub Check: Trace nox tests (3, 13, pandas-test)
GitHub Check: Trace nox tests (3, 13, vertexai)
GitHub Check: Trace nox tests (3, 13, openai)
GitHub Check: Trace nox tests (3, 13, notdiamond)
GitHub Check: Trace nox tests (3, 13, mistral1)
GitHub Check: Trace nox tests (3, 13, mistral0)
GitHub Check: Trace nox tests (3, 13, llamaindex)
GitHub Check: Trace nox tests (3, 13, litellm)
GitHub Check: Trace nox tests (3, 13, instructor)
GitHub Check: Trace nox tests (3, 13, huggingface)
GitHub Check: Trace nox tests (3, 13, groq)
GitHub Check: Trace nox tests (3, 13, cerebras)
GitHub Check: Trace nox tests (3, 13, trace_server)
GitHub Check: Trace nox tests (3, 13, trace)
GitHub Check: Trace nox tests (3, 12, pandas-test)
GitHub Check: Trace nox tests (3, 12, scorers)
GitHub Check: Trace nox tests (3, 12, vertexai)
GitHub Check: Trace nox tests (3, 12, openai)
GitHub Check: Trace nox tests (3, 12, notdiamond)
GitHub Check: Trace nox tests (3, 12, mistral1)
GitHub Check: Trace nox tests (3, 12, mistral0)
GitHub Check: Trace nox tests (3, 12, llamaindex)
GitHub Check: Trace nox tests (3, 12, litellm)
GitHub Check: Trace nox tests (3, 12, langchain)
GitHub Check: Trace nox tests (3, 12, instructor)
GitHub Check: Trace nox tests (3, 12, google_ai_studio)
GitHub Check: Trace nox tests (3, 12, huggingface)
GitHub Check: Trace nox tests (3, 12, groq)
GitHub Check: Trace nox tests (3, 12, dspy)
GitHub Check: Trace nox tests (3, 12, cohere)
GitHub Check: Trace nox tests (3, 12, cerebras)
GitHub Check: Trace nox tests (3, 12, bedrock)
GitHub Check: Trace nox tests (3, 12, anthropic)
GitHub Check: Trace nox tests (3, 12, trace_server)
GitHub Check: Trace nox tests (3, 12, trace)
GitHub Check: Trace nox tests (3, 11, pandas-test)
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🔇 Additional comments (11)

weave_query/weave_query/arrow/arrow.py (2)

480-506: LGTM! Well-designed solution for handling null offsets and masks.

The function effectively resolves the ambiguity between null offsets and masks in PyArrow 17.0.0 by checking offsets.null_count and applying the appropriate strategy.

🧰 Tools

🪛 Ruff (0.8.2)

484-484: Trailing whitespace

Remove trailing whitespace

(W291)

346-355: LGTM! Proper usage of safe_list_array_from_arrays.

The function is correctly used with all required parameters, maintaining the original functionality while adding safety checks.

weave_query/weave_query/arrow/arrow_tags.py (2)

8-11: LGTM! Clean import organization.

The imports are properly organized and include the new safe_list_array_from_arrays function.

36-41: LGTM! Proper usage of safe_list_array_from_arrays.

The function is correctly used with all required parameters, maintaining the original functionality while adding safety checks.

weave_query/weave_query/ops_arrow/arraylist_ops.py (2)

7-11: LGTM! Clean import organization.

The imports are properly organized and include the new safe_list_array_from_arrays function.

213-220: LGTM! Proper usage of safe_list_array_from_arrays.

The function is correctly used with all required parameters, maintaining the original functionality while adding safety checks.

weave_query/weave_query/arrow/concat.py (2)

28-28: LGTM! Clean import organization.

The import of safe_list_array_from_arrays is properly organized.

213-220: LGTM! Proper usage of safe_list_array_from_arrays.

The function is correctly used with all required parameters, maintaining the original functionality while adding safety checks.
weave_query/requirements.legacy.txt (1)

9-9: Verify security status of Pyarrow 17.0.0.

Let's check for any known security vulnerabilities in Pyarrow 17.0.0.
✅ Verification successful

🌐 Web query:
Are there any known security vulnerabilities in Apache Arrow (PyArrow) version 17.0.0?
💡 Result:

Apache Arrow (PyArrow) version 17.0.0 was released as a security fix for critical vulnerabilities in earlier versions, but it has introduced new stability issues unrelated to security:

Security Status of PyArrow 17

No active security vulnerabilities are reported for PyArrow 17 itself[1][4][10]. This version patched critical flaws:

CVE-2024-52338: Arbitrary code execution via deserialization in IPC/Parquet readers (fixed in R package v17)[1][4]

CVE-2023-47248: Similar deserialization exploit in PyArrow ≤14[3]

Known Issues in v17

While secure, users report:

Segmentation faults when importing PyArrow 17 on:

Python 3.x environments[5]

ARM-based systems using precompiled wheels[9]

Recommendations

Action Details

Security Upgrade to v17 if using vulnerable versions (≤16 for R package; ≤14 for PyArrow)[1][3][4]

Stability Test v17 thoroughly in your environment; downgrade to v15 temporarily if crashes occur[5][9]

PyArrow’s core security posture improved significantly with v17, though deployment may require additional testing for runtime stability[5][9].

Citations:

1: https://securityonline.info/cve-2024-52338-critical-security-flaw-in-apache-arrow-r-package-allows-arbitrary-code-execution/

2: https://security.snyk.io/package/pip/pyarrow/0.17.1

3: https://arrow.apache.org/security/

4: https://vulert.com/vuln-db/CVE-2024-52338

5: pip install pyarrow==17.0.0 causes segmentation fault 11 upon import with mac apache/arrow#43339

6: https://cve.mitre.org/cgi-bin/cvekey.cgi

7: https://ogma.in/cve-2024-52338-addressing-deserialization-vulnerabilities-in-apache-arrow-r-package

8: https://pypi.org/project/pyarrow/

9: [Python] Segmentation fault occurs on libarrow load when using the pyarrow 17.0.0 arm64 wheel apache/arrow#44342

10: https://app.opencve.io/cve/?vendor=apache_software_foundation

Pyarrow 17.0.0 Security Verification

The web query confirms that Pyarrow 17.0.0 has no active security vulnerabilities. It fixed critical issues from earlier versions (e.g., CVE-2024-52338 and CVE-2023-47248), though there are some stability issues in certain environments.

Security: No active vulnerabilities have been reported for Pyarrow 17.0.0.

Stability: Some environments (Python 3.x and ARM-based systems using precompiled wheels) have encountered segmentation faults; testing is advised.
weave_query/weave_query/arrow/convert.py (1)

311-313: LGTM! The change improves handling of null values in list arrays.

The switch to safe_list_array_from_arrays aligns with Pyarrow 17.0.0's stricter requirements for handling null masks and offsets.

Let's verify all usages of ListArray.from_arrays have been updated:
❌ Verification inconclusive

🏁 Script executed:
#!/bin/bash
# Description: Find any remaining direct usage of ListArray.from_arrays that might need updating

# Search for direct usage of ListArray.from_arrays
rg -A 5 'ListArray\.from_arrays'
Length of output: 6118

Approved Convert.py Change, but Further Verification on Other Usages Is Needed

The update in weave_query/weave_query/arrow/convert.py (lines 311–313) to use safe_list_array_from_arrays properly addresses PyArrow 17.0.0’s stricter handling of null masks and offsets. However, our search reveals that there are other direct calls to pa.ListArray.from_arrays in several locations (for example, in another part of convert.py, in arrow.py, syndata.py, and within the various ops_arrow modules). Please verify whether these additional instances should also adopt the safe helper for consistency.

The change in convert.py (lines 311–313) is correctly applied.

There is another instance in convert.py (assigning stringed_list) that still uses pa.ListArray.from_arrays.

Additional occurrences in files like arrow.py, syndata.py, and the ops_arrow modules should be checked to determine if they require similar updates.
weave_query/weave_query/arrow/list_.py (1)

807-813: LGTM! The change ensures proper handling of null values in list arrays.

The implementation correctly uses:

offsets_starting_at_zero for offset generation

pa.compute.is_null(arr) for null mask handling

safe_list_array_from_arrays for safe list array creation

Since this is a critical change in a core data structure, let's verify test coverage:
✅ Verification successful

🏁 Script executed:
#!/bin/bash
# Description: Check test coverage for ArrowWeaveList._map_column

# Search for tests related to _map_column
rg -A 5 'def test.*_map_column'
Length of output: 382

LGTM! The test coverage in weave_query/tests/test_arrow.py (specifically in the test_map_column function) confirms that the changes in handling null values and constructing list arrays are exercised. No further action is required here, though consider adding additional edge-case tests if possible.

domphan-wandb requested a review from a team as a code owner February 6, 2025 18:15

domphan-wandb requested a review from nicholaspun-wandb February 6, 2025 19:02

domphan-wandb force-pushed the dom/upgrade-pyarrow branch from bcb131d to 190f1c1 Compare February 6, 2025 19:11

domphan-wandb requested a review from wandb-kc February 6, 2025 20:17

nicholaspun-wandb approved these changes Feb 6, 2025

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wandb-kc approved these changes Feb 11, 2025

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tssweeney approved these changes Feb 11, 2025

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domphan-wandb added 3 commits February 12, 2025 08:21

chore: resolve ArrowInvalid error from ambiguous null specification

b5e6dd9

chore: update all ListArray.from_arrays calls to not use mask

6ef7830

fix(weave_query): Check for offsets with nulls before using a mask

316ad0e

domphan-wandb force-pushed the dom/upgrade-pyarrow branch from 190f1c1 to 316ad0e Compare February 12, 2025 16:21

domphan-wandb enabled auto-merge (squash) February 12, 2025 16:22

coderabbitai bot reviewed Feb 12, 2025

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domphan-wandb disabled auto-merge February 12, 2025 17:17

domphan-wandb added 3 commits February 12, 2025 09:28

chore: remove debug to trigger ci

42537a4

chore: add dummy commit to trigger frontend-tests

7828e70

chore: remove dummy commit changes

c1a403c

domphan-wandb enabled auto-merge (squash) February 12, 2025 19:06

domphan-wandb disabled auto-merge February 12, 2025 19:06

domphan-wandb enabled auto-merge (squash) February 12, 2025 19:06

wandb-kc disabled auto-merge February 12, 2025 19:35

wandb-kc merged commit 50cbaea into master Feb 12, 2025
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wandb-kc deleted the dom/upgrade-pyarrow branch February 12, 2025 19:35

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security(weave_query): Upgrade Pyarrow to 17.0.0 #3617

security(weave_query): Upgrade Pyarrow to 17.0.0 #3617

domphan-wandb commented Feb 6, 2025 •

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Security Status of PyArrow 17

Known Issues in v17

Recommendations

Action	Details
Security	Upgrade to v17 if using vulnerable versions (≤16 for R package; ≤14 for PyArrow)[1][3][4]
Stability	Test v17 thoroughly in your environment; downgrade to v15 temporarily if crashes occur[5][9]

security(weave_query): Upgrade Pyarrow to 17.0.0 #3617

security(weave_query): Upgrade Pyarrow to 17.0.0 #3617

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Description

16.1.0 -> 17.0.0 Upgrade Issues

Solution

Testing

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Security Status of PyArrow 17

Known Issues in v17

Recommendations

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