Fix DAT N-term modification bug.

wenbostar · Apr 9, 2021 · 10a24fc · 10a24fc
1 parent c453ec2
commit 10a24fc
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/pom.xml b/pom.xml
@@ -5,7 +5,7 @@
     <groupId>PDV</groupId>
     <artifactId>PDV</artifactId>
     <packaging>jar</packaging>
-    <version>1.7.2</version>
+    <version>1.7.3</version>
     <name>PDV</name>
     <url>https://github.com/wenbostar/PDV</url>
     <description>An integrative proteomics viewer</description>

diff --git a/src/main/java/PDVGUI/fileimport/DATFileImport.java b/src/main/java/PDVGUI/fileimport/DATFileImport.java
@@ -242,9 +242,9 @@ private void parseFile() throws SQLException, IOException {
             for (String aa : fixedModAAAndName.keySet()){
                 String modName = fixedModAAAndName.get(aa);
 
-                if (aa.equals("N-term")){
+                if (aa.equals("N-term") | aa.equals("N_term")){
                     utilitiesModifications.add(new ModificationMatch(modName, true, 1));
-                } else if (aa.equals("C-term")){
+                } else if (aa.equals("C-term") | aa.equals("C_term")){
                     utilitiesModifications.add(new ModificationMatch(modName, true, peptideSeq.length()));
                 } else {
                     for (int modIndex = 0; modIndex < peptideSeq.length(); modIndex ++){
@@ -398,7 +398,7 @@ private void addModification(Modification modification, Boolean isVariable){
             residues.add(location);
             String modName = singleModName + " of N-term";
             PTM ptm = new PTM(PTM.MODNPAA, modName, singleMass, residues);
-            ptm.setShortName(shortMod);
+            ptm.setShortName(singleModName);
             ptmFactory.addUserPTM(ptm);
 
             if (!allModifications.contains(modName)) {
@@ -413,7 +413,7 @@ private void addModification(Modification modification, Boolean isVariable){
             residues.add(location);
             String modName = singleModName + " of C-term";
             PTM ptm = new PTM(PTM.MODCP, modName, singleMass, residues);
-            ptm.setShortName(shortMod);
+            ptm.setShortName(singleModName);
             ptmFactory.addUserPTM(ptm);
 
             if (!allModifications.contains(modName)) {

diff --git a/src/main/java/PDVGUI/gui/PDVMainClass.java b/src/main/java/PDVGUI/gui/PDVMainClass.java
@@ -258,7 +258,7 @@ public class PDVMainClass extends JFrame {
     /**
      * Version
      */
-    private static final String VERSION = "1.7.2";
+    private static final String VERSION = "1.7.3";
 
     /**
      * Main class