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基因组组装注释pipeline

Kun Wang edited this page Jun 7, 2019 · 2 revisions

三代nanopore reads的过滤

https://github.com/wk8910/bio_tools/blob/master/00.scripts/nanopore_filter_fastq.pl
这个脚本里面有两个参数,一个是$min_length,指保留的最短reads长度;另一个是$min_qual,指代每一条reads中最小的平均质量值

next-denovo纠错

wtdbg组装

next-polish纠错

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