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Fixing dates in popgen day 5 tutorial
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Pigrenok committed Oct 1, 2024
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Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions current-year/practicals/population_genetics/pt-5-popgen.md
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Expand Up @@ -39,18 +39,18 @@ package in R.
## 2. Input into R

As before, create a directory for this practical (e.g.,
`2023-10-xx-population_genetics`). Copy over the R markdown notebook
`2024-10-01-population_genetics`). Copy over the R markdown notebook
`/shared/data/popgen/popgen.Rmd` to your project directory. Create `input/`
subdirectory and symlink the `snp.vcf.gz` and `snp.vcf.gz.tbi` file we created
in the last practical to it. If you don't have these files, you can use the
ones in: `/shared/data/backup_vcf`.
The output of the `tree` command should look like this:

```bash
2023-10-xx-population_genetics
2024-10-01-population_genetics
├── input
│   ├── snp.vcf.gz -> /home/alice/2024-08-01-genotyping/results/snp.vcf.gz
│   └── snp.vcf.gz.tbi -> /home/alice/2024-08-01-genotyping/results/snp.vcf.gz.tbi
│   ├── snp.vcf.gz -> /home/alice/2024-09-30-genotyping/results/snp.vcf.gz
│   └── snp.vcf.gz.tbi -> /home/alice/2024-09-30-genotyping/results/snp.vcf.gz.tbi
└── popgen.Rmd
```

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