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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 909 242

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 268 47

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 54 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 29 35

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 163 repositories
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 8 Apache-2.0 2 689 16 Updated Apr 26, 2025
  • consent Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent’s past year of commit activity
    Java 11 BSD-3-Clause 2 0 6 Updated Apr 25, 2025
  • tanagra Public

    Repo for the Tanagra service being developed by the All of Us DRC

    DataBiosphere/tanagra’s past year of commit activity
    Java 2 BSD-3-Clause 1 0 9 Updated Apr 25, 2025
  • leonardo Public

    Notebook service

    DataBiosphere/leonardo’s past year of commit activity
    Scala 44 BSD-3-Clause 21 1 22 Updated Apr 25, 2025
  • terra-scientific-pipelines-service Public
    DataBiosphere/terra-scientific-pipelines-service’s past year of commit activity
    Java 1 BSD-3-Clause 0 0 1 Updated Apr 25, 2025
  • toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    DataBiosphere/toil’s past year of commit activity
    Python 909 Apache-2.0 242 401 11 Updated Apr 25, 2025
  • data-portal Public
    DataBiosphere/data-portal’s past year of commit activity
    TypeScript 10 Apache-2.0 21 24 38 Updated Apr 25, 2025
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui’s past year of commit activity
    JavaScript 9 BSD-3-Clause 4 0 5 Updated Apr 25, 2025
  • data-browser Public
    DataBiosphere/data-browser’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 4 95 0 Updated Apr 25, 2025
  • terra-docker Public
    DataBiosphere/terra-docker’s past year of commit activity
    Jupyter Notebook 29 BSD-3-Clause 35 21 9 Updated Apr 24, 2025
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