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v0.6.0

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@andand andand released this 15 Jan 13:13
· 160 commits to master since this release
  • Allows GATK format of VCF file (new argument -–vcf_format).
  • Disabled old argument -–vcf_version. Now automatically finds out which fields to use irrespective of version.
  • Takes a genome fasta file as optional input (new argument -–fasta_file).
  • Calculates total coverage at position by summing allele counts rather than using the DP parameter.
  • Fixed FST calculation when inter-pi = 0.
  • Fixed bug in calc_per_gene_aminoacid_fst.