Code

Refactor readers xi#256

Code

Merged

mschwoer merged 19 commits intodevelopmentMannLabs/alphabase:developmentfrom refactor_readers_XIMannLabs/alphabase:refactor_readers_XICopy head branch name to clipboardJan 9, 2025

+185-136

Commits

Commits on Nov 22, 2024

• introduce MaxQuantLikeReader

  mschwoer

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• add missing commit

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• move sage reader transform_table to post-processing

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• add some docstrings

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• some simplifications

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• rename to ModifiedSequenceReader

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• rename MSFraggerPepXML

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• change df access

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• re-add origin_df parameter to post_process for backwards compatibility

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Commits on Nov 25, 2024

• drop hardcoded "EG.PrecursorId"

  mschwoer

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• refactor test_data_downloader.py to not depend on progressbar

  mschwoer

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• add new integration tests for psm reader

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• rename test_data_downloader.py

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• rename test_data_downloader.py

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• fix tests

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Commits on Nov 26, 2024

• debug tests

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• fix tests

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• Revert "debug tests"

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• fix tests

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