End to end testing #440
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| name: End to end testing | |
| on: | |
| pull_request: | |
| types: [ labeled ] | |
| # push: | |
| # branches: [ main ] | |
| schedule: | |
| - cron: "0 0 * * *" # daily on 12:00 AM | |
| workflow_dispatch: | |
| inputs: | |
| test_case: | |
| description: 'Test case to run (see e2e_test_cases.yaml for available cases), "all" to run all test cases.' | |
| required: false | |
| default: 'all' | |
| commitish_to_test: | |
| type: string | |
| description: 'Enter commit hash or branch to test (default: main).' | |
| default: "main" | |
| jobs: | |
| parse_inputs: | |
| runs-on: ubuntu-latest | |
| if: contains(github.event.pull_request.labels.*.name, 'test:e2e') || github.event_name == 'push' || github.event_name == 'workflow_dispatch' | |
| outputs: | |
| test_cases: ${{ steps.parse-test-cases.outputs.test_cases }} | |
| commitish_to_test: ${{ steps.parse-commitish-to-test.outputs.commitish_to_test }} | |
| steps: | |
| - id: parse-test-cases | |
| run: | | |
| if [ "${{ github.event_name }}" = "workflow_dispatch" ] && [ "${{ github.event.inputs.test_case }}" != "all" ]; then | |
| echo "test_cases=[\"${{ github.event.inputs.test_case }}\"]" >> $GITHUB_OUTPUT | |
| else | |
| # NEW TEST CASES ARE ADDED HERE: | |
| echo 'test_cases=["basic", "synchropasef", "astral", "astral_automatic_calibration", "multistep"]' >> $GITHUB_OUTPUT | |
| fi | |
| - id: parse-commitish-to-test | |
| run: | | |
| if [ "${{ github.event_name }}" = "workflow_dispatch" ]; then | |
| echo "commitish_to_test=[\"${{ github.event.inputs.commitish_to_test }}\"]" >> $GITHUB_OUTPUT | |
| else | |
| echo "commitish_to_test=main" >> $GITHUB_OUTPUT | |
| fi | |
| end2end_tests: | |
| name: End to end tests | |
| needs: parse_inputs | |
| runs-on: self-hosted | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| test_case: ${{ fromJson(needs.parse_inputs.outputs.test_cases) }} | |
| env: | |
| RUN_NAME: alphadia-${{github.sha}}-${{github.run_id}}-${{github.run_attempt}} | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| NEPTUNE_API_TOKEN: ${{ secrets.NEPTUNE_E2E_TOKEN }} | |
| NEPTUNE_PROJECT_NAME: "MannLabs/alphaDIA-e2e-tests" | |
| NUMBA_BOUNDSCHECK: 1 | |
| NUMBA_DEVELOPER_MODE: 1 | |
| NUMBA_FULL_TRACEBACKS: 1 | |
| TQDM_MININTERVAL: 10 # avoid lots of tqdm outputs | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ needs.parse_inputs.outputs.commitish_to_test }} | |
| - name: Pip installation (stable) | |
| id: pip_installation | |
| shell: bash -el {0} | |
| run: | | |
| conda info | |
| cd misc | |
| . ./pip_install.sh stable $RUN_NAME | |
| - name: Run e2e tests | |
| shell: bash -el {0} | |
| run: | | |
| cd tests | |
| . ./run_e2e_tests.sh ${{ matrix.test_case }} $RUN_NAME True ${GITHUB_SHA::7} $BRANCH_NAME | |
| - name: Cleanup | |
| if: always() | |
| shell: bash -l {0} | |
| run: | | |
| conda remove -n $RUN_NAME --all -y | |
| - name: Delete Caches on Error | |
| if: ${{ failure() && steps.pip_installation.conclusion == 'failure' }} | |
| shell: bash -el {0} | |
| run: | | |
| rm -rf ~/.cache/pip | |
| rm -rf ~/.cache/conda | |
| # Exit with error code to fail the job | |
| exit 1 |