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Add two step classifier#431

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anna-charlotte wants to merge 23 commits intomainMannLabs/alphadia:mainfrom add-two-step-classifierMannLabs/alphadia:add-two-step-classifierCopy head branch name to clipboard

+665-20

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Commits on Jan 16, 2025

• add logreg and two step classifer

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  bf480ff

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• add config param to enable 2-step-classifier

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  e6d3e3b

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• fix FDRManger two-step-classifier parameter

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  1c2065c

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• extract fdr utility functions due to circular import

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  29168e4

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• fix logreg initialization

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  124260f

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• fix fdr_utils test

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• Merge remote-tracking branch 'origin/main' into add-two-step-classifier

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  e450f24

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• fix fdr_utils refactoring

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Commits on Jan 17, 2025

• remove redundant perform_fdr_new function

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  e8fcc3f

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• revert fdr_utils changes

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  052c109

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• clean up and add docstrings

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• add missing docstring

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  9e8c0c8

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• clean up fdrexperimental.py

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• Merge remote-tracking branch 'origin/main' into add-two-step-classifier

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  8551503

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• formatting

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  2d2be2a

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• move models to new fdr_analysis module

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• move files from fdr_analysis to fdrx module

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Commits on Jan 20, 2025

• add max_iteration parameter to 2-step-classifier.fit_predict()

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  fdf62db

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• Merge remote-tracking branch 'origin/main' into add-two-step-classifier

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  1c8157f

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Commits on Jan 21, 2025

• refactoring of two-step-classifier helper functions

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  e6d6b95

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• add unit tests

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  65a11bb

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• formatting

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  ef6fc45

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• fix test for get_target_decoy_partners

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