Code

Development#36

Code

Merged

jalew188 merged 58 commits intomainMannLabs/alphaviz:mainfrom developmentMannLabs/alphaviz:developmentCopy head branch name to clipboardDec 19, 2023

+407,950-76

Commits

Commits on Sep 13, 2022

• ms_plot

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• MS_Plotter.model_mgr.transfer_learn()

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• MS_Plotter.model_mgr.transfer_learn()

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• easier access data

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• FIX plotly_hovermode

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Commits on Sep 14, 2022

• minor updates

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• update to peptdeep latest version

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Commits on Sep 15, 2022

• better bbplot

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Commits on Sep 16, 2022

• reader_utils

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Commits on Sep 17, 2022

• Feng contrib plots

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• rm alphatims version limit

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Commits on Sep 18, 2022

• add_shape->update_layout

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• include_precursor in xic plot

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• fig.show('svg')

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• refine PCC calc

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Commits on Sep 21, 2022

• minor changes

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Commits on Sep 25, 2022

• mDIa

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Commits on Sep 26, 2022

• integrated alpharaw

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Commits on Sep 28, 2022

• mDIA support

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• pcc

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Commits on Sep 30, 2022

• minor update

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• view_dim=rt or im

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Commits on Oct 1, 2022

• add zeros

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Commits on Oct 4, 2022

• minor updates

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Commits on Oct 5, 2022

• tims uint16 to float

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Commits on Oct 7, 2022

• FIX make_subplots import

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• legend_group

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• legend_group M0 seperated

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Commits on Oct 8, 2022

• int(charge)

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• FIX no peaks matched MS2

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• FIX no peaks matched MS2

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• FIX no peaks matched MS2

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• FIX no peaks matched MS2

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Commits on Oct 9, 2022

• FIX empty matching

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• rt_tol->rt_win

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Commits on Oct 12, 2022

• minor

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Commits on Oct 27, 2022

• ready for PR

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Commits on Oct 28, 2022

• find both left and left closest specs

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  56a1d22

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• Merge pull request #32 from jalew188/peptdeep_latest

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Commits on Jan 17, 2023

• Merge branch 'peptdeep_latest' of https://github.com/mannlabs/alphaviz into peptdeep_latest

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• mz slicing

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• update ms2 plots

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Commits on Jan 19, 2023

• frag_end_idx->frag_stop_idx; flex APIs

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• rename

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Commits on Jan 20, 2023

• use alphabase.match.match_utils instead of peptdeep's

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Commits on Feb 14, 2023

• use ppm or not

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Commits on Dec 19, 2023

• use alpharaw.viz for thermo

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• add example notebook

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• update

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• peptdeep upgraded

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• add xic plot example

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• add xic plot example

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• Merge pull request #35 from MannLabs/peptdeep_latest

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• contrib->thermo

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• use .bumpversion.cfg

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• move bumpversion.cfg to .bumpversion.cfg

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• move .bumpversion.cfg out of misc

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• Bump version: 1.1.15 → 1.2.0

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