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log segmentation channel
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sophiamaedler committed Dec 17, 2024
1 parent d3e1225 commit 1d8a5f5
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1 change: 1 addition & 0 deletions src/scportrait/pipeline/selection.py
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Expand Up @@ -266,6 +266,7 @@ class will automatically provide the most recent segmentation together with the

#calculate a coordinate lookup file where for each cell id the coordinates for their location in the segmentation mask are stored
self.log("Calculating coordinate lookup index for the specified cell ids.")
self.log(f"Using segmentation channel with the id: {self.segmentation_channel_to_select}")
start_time = timeit.default_timer()
cell_ids = self._get_cell_ids(cell_sets)
centers = self._get_centers(cell_ids)
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