fix ome zarr reader

MannLabs · Dec 15, 2024 · 3e1ead1 · 3e1ead1
1 parent 576291f
commit 3e1ead1
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/src/scportrait/pipeline/project.py b/src/scportrait/pipeline/project.py
@@ -816,8 +816,7 @@ def load_input_from_omezarr(
         self.log(f"Read input image from file {ome_zarr_path} to numpy array in {(time_end - time_start)/60} minutes.")
 
         # Access the metadata to get channel names
-        zarr_group = loc.zarr_group()
-        metadata = zarr_group.attrs.asdict()
+        metadata = loc.root_attrs
 
         if "omero" in metadata and "channels" in metadata["omero"]:
             channels = metadata["omero"]["channels"]