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improve spatialdata file handling #171

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merged 14 commits into from
Feb 11, 2025
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@sophiamaedler sophiamaedler commented Feb 10, 2025

…ialdata object

it should be possible to turn of rechunking when reading from an existing spatialdata object under the asumption that the chunksize was set logically. This prevents having to recalculate already existing chunks which has a lot of overhead during writing.
when the segmentation mask is written to the spatialdata object the centers file for that mask is also generated. This not only tracks unique cell_ids but also their location for easier visualization

see #42
@sophiamaedler sophiamaedler merged commit b717064 into main Feb 11, 2025
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[BUG] reading from sdata overwrites channel names
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