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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 938 458

  2. Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 234 75

  3. Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 281 140

  4. Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 32

  5. CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 83 62

  6. PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 191 90

Repositories

Showing 10 of 323 repositories
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    C# 16 Apache-2.0 16 0 2 Updated Apr 2, 2025
  • OmopViewer Public
    R 3 Apache-2.0 0 32 1 Updated Apr 2, 2025
  • CohortGenerator Public

    Cohort Generation for the OMOP Common Data Model

    R 14 11 22 (1 issue needs help) 4 Updated Apr 2, 2025
  • CohortDiagnostics Public

    An R package for performing various cohort diagnostics.

    R 43 50 34 (1 issue needs help) 1 Updated Apr 2, 2025
  • OncologyWG Public

    Oncology Working Group Repository

    Ruby 56 Apache-2.0 24 164 19 Updated Apr 2, 2025
  • WhiteRabbit Public

    WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

    Java 188 Apache-2.0 92 109 (3 issues need help) 5 Updated Apr 2, 2025
  • Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 234 Unlicense 75 205 10 Updated Apr 2, 2025
  • d2e Public

    Data2Evidence is an end-to-end solution for management of OMOP data - https://data2evidence.org

    TypeScript 9 Apache-2.0 0 0 6 Updated Apr 2, 2025
  • trex Public

    [Under development] Trex is the runtime for the D2E platform

    1 MIT 0 0 0 Updated Apr 2, 2025
  • Java 2 Apache-2.0 3 5 4 Updated Apr 1, 2025