Releases: desmarais-lab/NetworkInference
Releases · desmarais-lab/NetworkInference
NetworkInference 1.2.4
NetworkInference 1.2.3
Bug Fixes
- Fixed potential memory error from iterating over the beginning/end of a
std::map
NetworkInference 1.2.1
Bug Fixes
- netinf_ used ceiling on integer which caused error on Solaris
NetworkInference 1.2.0
New Features
Changes to netinf()
netinf()
got another speed-up. After the first edge, the computation
time for each edge is reduced by the factor number of nodes in the network- Number of edges can now be chosen using a Vuong style test. If this
procedure should be used, a p-value is chosen at which the inference of new
edges stops. This value is specified via the newp_value_cutoff
argument
tonetinf()
. - This lead to the netinf output having a fourth column now, containing the
p-value for each edge. The p-value is also available if a fixed number of edges
is chosen. - If no starting values are provided via the
params
argument parameters
are initialized by choosing the midpoint between the maximum possible
parameter value and the minimum possible value. These values are derived
using the closed form MLE of the respective parameter, derived from
either the minimum possible diffusion times (assuming a diffusion
'chain', i.e.a -> b -> c -> ...
) or the maximum possible diffusion
times (assuming a diffusion 'fan', i.e.a -> b, a -> c, a -> d,...
). n_edges
can now specify either an absolute number of edges, or a p-value
cutoff in the interval(0, 1)
for the Vuong test- The log normal distribution is now available as a diffusion model. With this
comes a change in the arguments fornetinf
. Instead oflambda
,
parameters are now specified with a vector (or scalar depending on
distribution)params
. For exponential and rayleigh distributionsparams
is just the rate / alpha parameter. For the log-normal distributionparams
specifies mean and variance (in that order). See thenetinf()
documentation for details on specificaiton and parametrization (?netinf
). - The output from
netinf()
now contains information on the model, parameters
and iterations as attributes. See the documentation for details. - The
policies
dataset has been updated with over 600 new policies from the
SPID database
(access viadata(policies)
). - Inferred cascade trees can now be returned by setting
trees = TRUE
.
New functions
- New function
drop_nodes()
now allows to drop nodes from all cascades in a cascade object.
Changes to simulate_cascades()
simulate_cascades()
now supports passing of additional (isolated in the diffusion network) nodes via thenodes
argument.simulate_cascades()
now also supports the log-normal distribution.
Bug Fixes
- Inference of very uninformative edges (large number of edges) could lead for the software to break. Fixed now
- In
simulate_cascades()
with partial cascades provided, it was possible that nodes experienced an event earlier than the last event in the partial cascade. Now, the earliest event time is the last observed event time in the partial cascade.
Other changes
- C++ code is now modularized and headers are properly documented
NetworkInference 1.1.2
New Features
- We made changes to the internal data structures of the netinf function, so it is much faster and memory efficient now.
netinf()
now has a shiny progress bar!as.cascade
is now completely removed (see release note on version 1.1.0).- New convenience function to subset cascades by time (
subset_cascade_time
) and by cascade id (subset_cascade
).
Bug Fixes
- Long running functions (that call compiled code) can now be interrupted without crashing the R session.
as_cascade_long()
andas_cascade_wide()
handle date input correctly now.as_cascade_wide()
couldn't handle data input of classdata.table
.
NetworkInference 1.1.1
Bug Fixes
- Use of igraph now conditional compliant with Writing R Extensions 1.1.3.1
- Fixed version number displayed in startup message
NetworkInference 1.1.0
New Features
- Data format (long or wide) of
as.cascade
is not bound to the class of the data object anymore. In 1.0.0 wide format had to be a matrix and long format had to be a dataframe. This did not make much sense.as.cascade
is now deprecated and replaced by two new functionsas_cascade_long
andas_cascade_wide
.
Bug Fixes
- x and y axis labels in
plot.cascade
with optionlabel_nodes=FALSE
were
reversed
First release
v1.0.0 update description date