pyproject.toml

[tool.poetry]
name = "topas-pipeline"
version = "0.1.0"
description = ""
authors = ["Cecilia Jensen <cecilia.jensen@tum.de>", "Matthew The <matthew.the@tum.de>", "Firas Hamood <firas.hamood@tum.de>"]
license= "Apache-2.0"
readme = "README.md"
homepage = "https://github.com/kusterlab/topas-pipeline"
repository = "https://github.com/kusterlab/topas-pipeline"
keywords = ["mass spectrometry", "protein inference", "proteomics"]
include = [
  "LICENSE",
]

[tool.poetry.dependencies]
python = ">=3.9,<3.11"
pandas = ">=2.2.0"
numpy = ">=1.22.3"
seaborn = ">=0.13.2"
scipy = "^1.8.0"
matplotlib = "^3.5.2"
openpyxl = "^3.1.2"
networkx = "^2.8"
XlsxWriter = "^3.0.3"
toml = ">=0.10.2"
ppca = "^0.0.4"
requests = "^2.28.1"
umap-learn = "^0.5.3"
scikit-learn = "^1.3.0"
picked-group-fdr = ">=0.7.6"
simsi-transfer = ">=0.6.3"
job-pool = ">=0.3.1"
psite-annotation = ">=0.5.0"
triqler = ">=0.8.1"
statsmodels = "^0.14.2"
pyarrow = ">=16.0.0"

[tool.poetry.group.dev.dependencies]
pytest = "^7.1.2"
ipykernel = "^6.24.0"
pytest-mock = "^3.14.0"
squarify = "^0.4.4"
pytest-cov = "^6.0.0"

[build-system]
requires = ["poetry-core>=1.5.1"]
build-backend = "poetry.core.masonry.api"