Skip to content

Issues: nf-core/clipseq

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

33 Open 21 Closed
33 Open 21 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

make filtering the GTF and downstream steps optional enhancement Improvement for existing functionality
#140 opened Mar 24, 2025 by iraiosub
@iraiosub
write subworkflow enhancement Improvement for existing functionality
#138 opened Mar 24, 2025 by MelinaKlostermann
Test and integarte peak input from peakcallers other then pureclip enhancement Improvement for existing functionality
#137 opened Mar 24, 2025 by MelinaKlostermann
Replace original filtering with ensembl canonical tag enhancement Improvement for existing functionality
#134 opened Mar 24, 2025 by kkuret
@iraiosub @kkuret
Modify the input to STAR_ALIGN module to use unfiltered GTF file instead of filtered gtf with: --sjdbGTFfile bug Something isn't working
#133 opened Mar 24, 2025 by kkuret
4 tasks
1
@iraiosub @kkuret
tube map diagram! enhancement Improvement for existing functionality
#132 opened Mar 21, 2025 by CharlotteAnne
update pipeline to latest nf-core template enhancement Improvement for existing functionality
#131 opened Mar 21, 2025 by CharlotteAnne
update all nf-core modules enhancement Improvement for existing functionality
#130 opened Mar 21, 2025 by CharlotteAnne
create QC report module enhancement Improvement for existing functionality
#127 opened Mar 18, 2025 by CharlotteAnne
@MelinaKlostermann
add ucsc bedgraph->bigwig to pipeline as BSF input enhancement Improvement for existing functionality
#126 opened Mar 18, 2025 by CharlotteAnne
@CharlotteAnne @JDocherty67
add into main pipeline enhancement Improvement for existing functionality
#125 opened Mar 18, 2025 by CharlotteAnne
@CharlotteAnne
1
adding nf-test to CI workflow enhancement Improvement for existing functionality
#124 opened Mar 18, 2025 by CharlotteAnne
nf-test enhancement Improvement for existing functionality
#123 opened Mar 18, 2025 by CharlotteAnne
@HDash
comment in bindingsitefinder.R script enhancement Improvement for existing functionality
#122 opened Mar 18, 2025 by CharlotteAnne
@MelinaKlostermann
Reformat module main.nf to nf-core style enhancement Improvement for existing functionality
#121 opened Mar 18, 2025 by CharlotteAnne
@MelinaKlostermann
Add BindingSiteFinder to pipeline enhancement Improvement for existing functionality
#120 opened Mar 18, 2025 by CharlotteAnne
@MelinaKlostermann
1
Address complicated annotation generation enhancement Improvement for existing functionality
#119 opened Mar 4, 2025 by CharlotteAnne
@CharlotteAnne @iraiosub @kkuret
Update umitools/extract bug Something isn't working
#117 opened Mar 4, 2025 by slebedeva
1 task
Make bowtie pre-mapping optional enhancement Improvement for existing functionality
#116 opened Jan 28, 2025 by CharlotteAnne
@slebedeva @CharlotteAnne
1
BAM entry point enhancement Improvement for existing functionality
#112 opened Apr 3, 2024 by CharlotteAnne
@CharlotteAnne
alternative motifs to peka (homer,streme)
#99 opened Jul 12, 2023 by CharlotteAnne
option to run icount metagene on peaks enhancement Improvement for existing functionality
#98 opened Jul 12, 2023 by CharlotteAnne
paraclu nucleotide position error bug Something isn't working
#97 opened Jul 12, 2023 by CharlotteAnne
@amchakra
1
demultiplexing
#95 opened Jul 12, 2023 by CharlotteAnne
add clipqc and multiqc to 2.0 enhancement Improvement for existing functionality
#92 opened Jul 6, 2023 by CharlotteAnne
@SimranChhabria
1
ProTip! Add no:assignee to see everything that’s not assigned.