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nf-core modules lint fails when a wave container is succesfully provisioned, using a channel other than bioconda or conda-forge.
nf-core modules lint
bioconda
conda-forge
Module in question uses the conda channel ome.
ome
nf-core modules lint bioformats2raw ,--./,-. ___ __ __ __ ___ /,-._.--~\ |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/tools version 3.3.0.dev0 - https://nf-co.re INFO Linting modules repo: '.' INFO Linting module: 'bioformats2raw' ╭─ [!] 2 Module Test Warnings ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╮ │ ╷ ╷ │ │ Module name │ File path │ Test message │ │╶────────────────┼────────────────────────────────────────┼─────────────────────────────────────────────────────────────────────────────────────────╴│ │ bioformats2raw │ modules/nf-core/bioformats2raw/main.nf │ Unable to connect to container registry, code: 404, url: │ │ │ │ https://community.wave.seqera.io/library/bioformats2raw:0.9.4--3eec45888b3759e5 │ │ bioformats2raw │ modules/nf-core/bioformats2raw/main.nf │ Container versions do not match │ │ ╵ ╵ │ ╰─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯ ╭─ [✗] 1 Module Test Failed ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╮ │ ╷ ╷ │ │ Module name │ File path │ Test message │ │╶────────────────┼────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────────────────────────╴│ │ bioformats2raw │ modules/nf-core/bioformats2raw/environment.yml │ The environment.yml of the module bioformats2raw is not valid: 'ome' is not one │ │ │ │ of ['bioconda', 'conda-forge']. Check the entry for channels. │ │ ╵ ╵ │ ╰─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯ ╭───────────────────────╮ │ LINT RESULTS SUMMARY │ ├───────────────────────┤ │ [✔] 35 Tests Passed │ │ [!] 2 Test Warnings │ │ [✗] 1 Test Failed │ ╰───────────────────────╯
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Description of the bug
nf-core modules lint
fails when a wave container is succesfully provisioned, using a channel other thanbioconda
orconda-forge
.Module in question uses the conda channel
ome
.Command used and terminal output
System information
No response
The text was updated successfully, but these errors were encountered: