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Issues: nf-core/tools

[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
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Download: Fix support for Seqera Community Containers
#3179 opened Sep 24, 2024 by MatthiasZepper
Open 7
Renovate Dashboard 🤖
#2596 opened Dec 19, 2023 by renovate bot
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260 Open 882 Closed
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Issues list

Havin an ssh remote for modules fails linting bug Something isn't working
#3510 opened Mar 25, 2025 by maxulysse
nf-test local modules/subworkflows of nf-core pipelines on GitHub actions enhancement
#3507 opened Mar 25, 2025 by vagkaratzas
nf-core pipelines launch ends in a stacktrace bug Something isn't working
#3500 opened Mar 24, 2025 by mahesh-panchal
Channel is not one of ['bioconda', 'conda-forge'] bug Something isn't working
#3499 opened Mar 24, 2025 by camlloyd
Tools pipeline tests use nf-test enhancement infrastructure nf-test pipeline-testing
#3497 opened Mar 21, 2025 by mirpedrol
lint fix not working with "*.sam" bug Something isn't working
#3496 opened Mar 21, 2025 by GallVp
Add check for default outdir to null enhancement
#3495 opened Mar 19, 2025 by maxulysse
1
pipelines download not working as expected? bug Something isn't working download nf-core download
#3490 opened Mar 14, 2025 by fellen31
Page not found: https://nf-co.re/tools/docs/ bug Something isn't working documentation good-first-issue
#3489 opened Mar 13, 2025 by MehrazRumman
4
Add subcommand for searching nf-core test-datasets command line tools Anything to do with the cli interfaces good-first-issue
#3487 opened Mar 11, 2025 by jfy133
@JulianFlesch
11
Error linting module that has the keyword val in its emit name bug Something isn't working good-first-issue
#3483 opened Mar 6, 2025 by AlexVCaron
1
Check for import in all workflows bug Something isn't working
#3479 opened Mar 5, 2025 by LouisLeNezet 3.3.0
Deprecate devcontainer.json good-first-issue template nf-core pipeline/component template
#3466 opened Feb 24, 2025 by kenibrewer
5 tasks
1
Test out new CI alternatives
#3465 opened Feb 24, 2025 by edmundmiller
@mashehu @mirpedrol
@edmundmiller @ningyuxin1999
1
AWS full tests automation bug Something isn't working high-priority pipeline-testing template nf-core pipeline/component template
#3462 opened Feb 21, 2025 by mirpedrol 3.3.0
2
Allow nf-core modules lint for pip enhancement good-first-issue
#3461 opened Feb 21, 2025 by maxulysse
@kalexandru
2
For bump-version don't consider it an error if test snaps do not contain pipeline version bug Something isn't working good-first-issue
#3453 opened Feb 14, 2025 by erikrikarddaniel
@mashehu
Duplicate email entries in rocrate.json generation bug Something isn't working
#3452 opened Feb 13, 2025 by jfy133
Automatically bump version during template update enhancement
#3449 opened Feb 10, 2025 by edmundmiller
3
Add args section in meta.yml enhancement
#3444 opened Feb 5, 2025 by arnaudbore
1
2
modules lint can't handle nested environment.yml files bug Something isn't working
#3436 opened Jan 31, 2025 by mashehu
Institutional configs are not included when NXF_OFFLINE is on bug Something isn't working
#3430 opened Jan 27, 2025 by Aratz
3
PULL_REQUEST_TEMPLATE.md fails files_unchanged linting test depending on local choice of default branch bug Something isn't working
#3423 opened Jan 24, 2025 by alexlyttle
1
Behaviour of lint check files_unchanged is different in 3.1.2 bug Something isn't working good-first-issue
#3422 opened Jan 24, 2025 by awgymer
False positive merge marker failures due to .venv directory bug Something isn't working
#3420 opened Jan 22, 2025 by heuermh
1
ProTip! Updated in the last three days: updated:>2025-03-22.