Skip to content

Issues: nf-core/tools

[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
Open
Download: Fix support for Seqera Community Containers
#3179 opened Sep 24, 2024 by MatthiasZepper
Open 7
Renovate Dashboard 🤖
#2596 opened Dec 19, 2023 by renovate bot
Open
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
264 Open 882 Closed
264 Open 882 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Refactor pipeline emails infrastructure template nf-core pipeline/component template
#112 opened Aug 9, 2018 by ewels
Actions CI - use include for old Nextflow version good-first-issue linting template nf-core pipeline/component template
#1081 opened May 14, 2021 by ewels
Add ECLint to main tools repo linting
#1120 opened Jun 18, 2021 by drpatelh
Refgenie Integration (Overview) command line tools Anything to do with the cli interfaces template nf-core pipeline/component template
#1239 opened Jul 29, 2021 by KevinMenden
@mirpedrol @ErikDanielsson
Default parameters not showing up on NF Tower URL bug Something isn't working
#1249 opened Aug 4, 2021 by tamuanand
Lint for correct publishDir specification in modules.config linting modules Related to tools for working with DSL2 modules
#1286 opened Oct 11, 2021 by drpatelh
Add GPU labels to template infrastructure template nf-core pipeline/component template
#1383 opened Jan 19, 2022 by Zethson
Download: Specify config location command line tools Anything to do with the cli interfaces download nf-core download enhancement infrastructure
#1388 opened Jan 31, 2022 by ewels
Auto-update software versions in modules automation command line tools Anything to do with the cli interfaces infrastructure
#1434 opened Mar 10, 2022 by FriederikeHanssen
1
Use dunk for snazzy diff output command line tools Anything to do with the cli interfaces low-priority
#1507 opened Apr 3, 2022 by ewels
Subworkflow handling and custom modules
#1524 opened Apr 22, 2022 by matthdsm
Better modules/update.py
#1525 opened Apr 22, 2022 by fabianegli
modules update behaves differently depending on whether you're updating all modules or an individual module bug Something isn't working infrastructure
#1532 opened Apr 26, 2022 by marc-jones
Too many commented out tests enhancement infrastructure
#1689 opened Jul 21, 2022 by fabianegli
4 tasks
pathlib adoption roadmap and summary issue enhancement
#1703 opened Jul 28, 2022 by fabianegli
5 of 29 tasks
Test coverage 80% enhancement infrastructure
#1790 opened Aug 31, 2022 by fabianegli
Bioconda also uses channel priority strict
#1813 opened Sep 6, 2022 by fabianegli
Template fix-linting: add black + isort automation infrastructure template nf-core pipeline/component template
#1815 opened Sep 7, 2022 by ewels
Add a test to linting to check generating a DAG and execution report works enhancement
#1852 opened Sep 29, 2022 by mahesh-panchal
Container registry links is going to break pre-image download bug Something isn't working download nf-core download
#1949 opened Oct 13, 2022 by edmundmiller
Improving email documentation
#1956 opened Oct 18, 2022 by mshunjan
Expose the default branch setting to the CLI command line tools Anything to do with the cli interfaces
#1960 opened Oct 20, 2022 by fabianegli
1 task
Pipeline modules update: Warn if any input channels change command line tools Anything to do with the cli interfaces modules Related to tools for working with DSL2 modules
#1993 opened Nov 2, 2022 by ewels
Bump-versions for all subcommands enhancement infrastructure
#2018 opened Nov 10, 2022 by FriederikeHanssen
Support downloading singularity images not hosted on HTTP servers download nf-core download enhancement
#2020 opened Nov 14, 2022 by nebfield
ProTip! Updated in the last three days: updated:>2025-03-26.