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Pull requests: nf-core/tools

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Pull requests list

Moved all singularity-related download functions into a new file download nf-core download
#3509 opened Mar 25, 2025 by muffato • Draft
4 tasks
@muffato
Move WorkflowRepo class into seperate file, since it will be shared b…
#3506 opened Mar 24, 2025 by MatthiasZepper • Draft
1 of 4 tasks
5
Avoid crash when adding ontologies if not a proper meta.yml
#3503 opened Mar 24, 2025 by toniher Loading…
4
[Draft] Feature/test datasets
#3494 opened Mar 18, 2025 by JulianFlesch • Draft
3 of 4 tasks
7
RO-crate content appear in the nf-core lint warning if there is a TODO
#3493 opened Mar 17, 2025 by ningyuxin1999 Loading…
4 tasks done
@ningyuxin1999
7
Include the centralized nf-core configs also in offline mode, if a local copy is available.
#3491 opened Mar 14, 2025 by MatthiasZepper Loading…
3 of 4 tasks
12
Fix multiple workflow in subworkflow
#3486 opened Mar 7, 2025 by LouisLeNezet Loading…
2 of 4 tasks
15
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
11
remove hard coded key prefix for schema in launcher
#3432 opened Jan 28, 2025 by mashehu Loading…
6
Update dependency prompt_toolkit to <=3.0.50
#3412 opened Jan 21, 2025 by renovate bot Loading…
1 task
1
Remove args stub from module template to satisfy language server
#3403 opened Jan 17, 2025 by jfy133 Loading…
4 tasks
3.3.0
16
Update dependency textual-dev to v1.7.0
#3378 opened Jan 1, 2025 by renovate bot Loading…
1 task
Fix usage of cache path and implement parallized testing WIP Work in progress
#3291 opened Nov 21, 2024 by mashehu • Draft
Template: Add gpu profile
#3272 opened Nov 7, 2024 by mashehu Loading… 3.3.0
18
3262 Fix pipeline lint bug for pipelines with minimal template features awaiting-feedback
#3265 opened Oct 30, 2024 by awgymer • Draft
4 tasks
1
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.3.0
10
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
3
Automating pytest migration automation nf-test
#3138 opened Aug 23, 2024 by GallVp • Draft
3
Schema: rewrite to run local only and handle newer schema versions WIP Work in progress
#3117 opened Aug 14, 2024 by mashehu Loading…
3
Support version topic channels
#3093 opened Aug 1, 2024 by edmundmiller Loading…
4 tasks
@edmundmiller
5
fix the nested list bug that makes email not be delivered
#3081 opened Jul 25, 2024 by HaidYi Loading…
2 of 4 tasks
12
ci: Run checks on renovate branches to avoid creating and merging PRs
#3018 opened Jun 6, 2024 by edmundmiller Loading…
@edmundmiller
1
Add nf-core configs create sub command (attempt 2)
#3001 opened May 25, 2024 by jfy133 • Draft
1 of 9 tasks
3.4.0
2
Plugin to view .nextflow.log files using toolong WIP Work in progress
#2895 opened Mar 22, 2024 by ewels • Draft
2 of 4 tasks
3
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