chore: troubleshooting CI #42

	name: Python Package CI

	on: [push]

	env:
	UV_SYSTEM_PYTHON: 1

	jobs:
	ci:
	needs: [
	# ostest,
	full-ci,
	]
	name: CI
	runs-on: 'ubuntu-latest'
	steps:
	- name: Done
	run: exit 0

	full-ci:
	runs-on: 'ubuntu-latest'
	strategy:
	max-parallel: 5
	matrix:
	python-version: ["3.10", "3.11"]

	steps:
	- uses: actions/checkout@v4

	- name: Install uv
	uses: astral-sh/setup-uv@v3

	- name: Set up Python ${{ matrix.python-version }}
	run: \|
	uv python install ${{ matrix.python-version }}
	uv venv

	- name: Install project
	run: \|
	uv sync --all-extras --dev

	- name: Activate venv
	run: \|
	source .venv/bin/activate

	- name: Test with pytest
	run: \|
	source .venv/bin/activate
	pytest -v

	- name: Test table io from commandline
	run: \|
	source .venv/bin/activate
	geomux -i example/example.tsv.gz -o results_table.tab

	- name: Test adat io from commandline
	run: \|
	source .venv/bin/activate
	geomux -i example/example.h5ad -o results_table.tab

	# ostest:
	# runs-on: ${{ matrix.os }}
	# strategy:
	# max-parallel: 5
	# matrix:
	# os: ["windows-latest", "macos-latest"]

	# steps:
	# - uses: actions/checkout@v4

	# - name: Install uv
	# uses: astral-sh/setup-uv@v3

	# - name: Set up Python 3.11
	# run: uv python install 3.11

	# - name: Install project
	# run: \|
	# uv sync --all-extras --dev

	# - name: Test with pytest
	# run: \|
	# uv run pytest -v

	# - name: Test table io from commandline
	# run: \|
	# uv run geomux -i example/example.tsv.gz -o results_table.tab

	# - name: Test adat io from commandline
	# run: \|
	# uv run geomux -i example/example.h5ad -o results_table.tab

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