chore: troubleshooting CI

.github/workflows/CI.yml

@@ -2,13 +2,10 @@ name: Python Package CI
 
 on: [push]
 
-# env:
-#   UV_SYSTEM_PYTHON: 1
-
 jobs:
   ci:
     needs: [
-      # ostest, 
+      ostest, 
       full-ci,
     ]
     name: CI
@@ -33,8 +30,8 @@ jobs:
       - name: Set up Python ${{ matrix.python-version }}
         run: |
           uv python install ${{ matrix.python-version }}
-          uv venv
-  
+          uv venv  
+
       - name: Install project
         run: |
           uv sync --all-extras --dev
@@ -54,34 +51,37 @@ jobs:
           source .venv/bin/activate
           geomux -i example/example.h5ad -o results_table.tab
 
-  # ostest:
-  #   runs-on: ${{ matrix.os }}
-  #   strategy:
-  #     max-parallel: 5
-  #     matrix:
-  #       os: ["windows-latest", "macos-latest"]
+  ostest:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      max-parallel: 5
+      matrix:
+        os: ["windows-latest", "macos-latest"]
 
-  #   steps:
-  #   - uses: actions/checkout@v4
+    steps:
+    - uses: actions/checkout@v4
 
-  #   - name: Install uv
-  #     uses: astral-sh/setup-uv@v3
+    - name: Install uv
+      uses: astral-sh/setup-uv@v3
 
-  #   - name: Set up Python 3.11
-  #     run: uv python install 3.11
+    - name: Set up Python 3.11
+      run: uv python install 3.11
 
-  #   - name: Install project
-  #     run: |
-  #       uv sync --all-extras --dev
+    - name: Install project
+      run: |
+        uv sync --all-extras --dev
 
-  #   - name: Test with pytest
-  #     run: |
-  #       uv run pytest -v
+    - name: Test with pytest
+      run: |
+        source .venv/bin/activate
+        pytest -v
 
-  #   - name: Test table io from commandline
-  #     run: |
-  #       uv run geomux -i example/example.tsv.gz -o results_table.tab
+    - name: Test table io from commandline
+      run: |
+        source .venv/bin/activate
+        geomux -i example/example.tsv.gz -o results_table.tab
 
-  #   - name: Test adat io from commandline
-  #     run: |
-  #       uv run geomux -i example/example.h5ad -o results_table.tab
+    - name: Test adat io from commandline
+      run: |
+        source .venv/bin/activate
+        geomux -i example/example.h5ad -o results_table.tab