Steinegger Lab

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28 repositories

foldseek
Public
Foldseek enables fast and sensitive comparisons of large structure sets.
clustering protein-structure alignments bioinformatics
C
•
GNU General Public License v3.0
•103•840•180•2•Updated Nov 26, 2024Nov 26, 2024
afdb-clusters-web
Public
Jupyter Notebook
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GNU General Public License v3.0
•1•2•1•0•Updated Nov 24, 2024Nov 24, 2024
bfvd-analysis
Public
Big Fantastic Virus Database (BFVD): Code used for analyses
Shell
•0•1•0•0•Updated Nov 23, 2024Nov 23, 2024
mmseqs2-gpu-analysis
Public
Shell
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MIT License
•0•9•0•0•Updated Nov 16, 2024Nov 16, 2024
foldmason
Public
Multiple Protein Structure Alignment at Scale with FoldMason
bioinformatics protein-structure msa
C
•
GNU General Public License v3.0
•14•137•9•0•Updated Nov 12, 2024Nov 12, 2024
folddisco
Public
Fast indexing and search of discontinuous motifs in protein structures
bioinformatics protein-structure motif foldseek
Rust
•
GNU General Public License v3.0
•1•15•3•0•Updated Nov 11, 2024Nov 11, 2024
Metabuli-App
Public
HTML
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GNU General Public License v3.0
•2•21•0•0•Updated Nov 2, 2024Nov 2, 2024
foldseek-multimer-analysis
Public
Shell
•1•1•0•0•Updated Oct 31, 2024Oct 31, 2024
colabfold-protocol
Public
ColabFold protocol
Jupyter Notebook
•8•46•1•0•Updated Oct 17, 2024Oct 17, 2024
ufcg
Public
UFCG: Universal Fungal Core Genes
genomics phylogenetics fungi marker-gene-analysis bioinformatics
Java
•
GNU General Public License v3.0
•0•32•16•0•Updated Oct 16, 2024Oct 16, 2024
Metabuli-regression
Public
Regression tests for Metabuli
Shell
•
GNU General Public License v3.0
•0•0•0•0•Updated Oct 15, 2024Oct 15, 2024
Metabuli
Public
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
bioinformatics taxonomy metagenomics k-mer taxonomic-classification
C++
•
GNU General Public License v3.0
•10•118•16•0•Updated Oct 3, 2024Oct 3, 2024
unicore
Public
Universal and efficient core gene phylogeny with Foldseek and ProstT5
Rust
•
GNU General Public License v3.0
•1•14•0•0•Updated Sep 19, 2024Sep 19, 2024
foldseek-regression
Public
Regression test for foldseek
Shell
•2•3•0•1•Updated Sep 14, 2024Sep 14, 2024
foldmason-analysis
Public
Shell
•0•1•0•0•Updated Aug 27, 2024Aug 27, 2024
foldcomp
Public
Compressing protein structures effectively with torsion angles
bioinformatics protein-structure compression
C++
•
GNU General Public License v3.0
•14•163•25•0•Updated Aug 9, 2024Aug 9, 2024
alphafold
Public
Open source code for AlphaFold.
Python
•
Apache License 2.0
•2.3k•11•0•2•Updated Jul 9, 2024Jul 9, 2024
ufcg-web
Public
UFCG website
HTML
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GNU General Public License v3.0
•0•1•0•0•Updated Jul 2, 2024Jul 2, 2024
SeekRank
Public
Rank homologous protein sequences based on a regressor trained on experimental measures
Jupyter Notebook
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MIT License
•0•6•0•0•Updated Jun 22, 2024Jun 22, 2024
foldseek-analysis
Public
Scripts to benchmark and train foldseek
Jupyter Notebook
•4•33•5•1•Updated May 22, 2024May 22, 2024
petasearch
Public
🧬 Efficient parallelized peta-scale protein database search
C
•
GNU General Public License v3.0
•0•42•5•0•Updated Jan 4, 2024Jan 4, 2024
petasearch-regression
Public
C++
•0•0•0•0•Updated Jan 4, 2024Jan 4, 2024
afdb-clusters-analysis
Public
Scripts to generate and analyze afdb clusters
Jupyter Notebook
•0•10•1•0•Updated Sep 15, 2023Sep 15, 2023
Metabuli-temp
Public archive
Taxonomical classifier using AD k-mer
C++
•
GNU General Public License v3.0
•10•1•0•0•Updated May 30, 2023May 30, 2023
foldcomp-analysis
Public
C
•
GNU General Public License v3.0
•0•3•0•0•Updated Feb 20, 2023Feb 20, 2023
conterminator
Public
Detection of incorrectly labeled sequences across kingdoms
C
•
GNU General Public License v3.0
•7•80•15•1•Updated Oct 25, 2022Oct 25, 2022
probeit
Public
Design capture probes
Python
•
GNU General Public License v3.0
•2•9•0•0•Updated Apr 26, 2022Apr 26, 2022
steineggerlab.github.io
Public
Steinegger Lab page
HTML
•0•0•0•0•Updated Mar 12, 2020Mar 12, 2020